Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0136 ATGATCATGGAGCTCCCCGATTCCACCGGCGGCGACCGCAACCTTAACGCGCCGCCGCCGCCGCCGCCGCCCCAGCACAACAACCATCACCAGGACGCTCGCTCAGGCCTCGGAATCGACCTTAACGAGATCCCTTCGCCTTCCTCCTTGTTCCCCGAAACCCTACCGGACTCCGTCACCGACGTCGTCCGCACTTATCACGAGAACCCCGGGCCGCCGCCGGGAGCCCCCGCTTCCCTCCCCAGTGGTGGCCTCGCTCCTTGCGCTGCCTGCTCCAAGCCCTGCCCTACCGCCGCCGGGAGCCACCACCACCTCGTCGTGTGCGACGGCTGCGAGCGCGGCTTCCACCTCGCCTGCGCCGGAATTCGCGGCGGAGGACGCCAGGCTGCGAGCCTGGAGGAGTGGGTCTGCGGCGAGTGCGTCGCCTCTGGAGTGAAGAGCAAGCGGTGGCCGTTGGGAGTGAAGCAGCTTCTCGATATCAACGCTCCGCCACCGAGCGAAGCCGAAGCCGAAGGCGTCGGCGAAGGAGACGTGCATGATTTGAGAAAGCAAACTCTCGGTGATAATTATTTTGGTGCCAGTCCATTTGGTGCCCCTGTGACATATTCAAACTTTTACAATGGAAATGGTACTGGCTTCCAAAAGGCTTCTGGAGGTTTGACACAAGCTGATAGAGTGGGTTTTGAGGATATATTGAATCATACTCAATCGATTACTAGAAAATTTGAGGAGGCTCTTAAAGATTTTATATCTGAACGGCGCGGTGTACTAGAGGAAGGTTGGCGAGTGGAATTTAGACAATCAGTTAGCAGCTCTGAACTATATGCAGTTTACTGTGCACCTGACGGAAAGATATTTGATTCTGTGTATGAAGTAGCTTGTTATTTGGGGCTAATGTCTGGCTTCAATGCCGTTGAATCTGAAATAAGAAATGAGAGGTCTCTTGTGTCTTTAGGTGGTTCTCTATCTAGGAAAAAAAAGTCAACAAGATCTCCCGTAGTCAATGGTTTCATGGAAAAACGGGGAACCATGATGAATAGTAATTGTAAGGATCCTTCTTCTGAAGGTTTAAATGTGGAGTGTGCTAGTACTAGGGGGAATATCGCAAAACCCTATGAAAGTGGAAGAAAAGAGGATGGACAGTCCTTCCCTCAGCAATTTGAGGATGAACTCCCTCTACAGTTCAAGGACTTCTTTGTTCTCTCATTAGGGAAAGTTGATGTGAGACCATCGTATTATGATGTTAATCTTATATGTCCTGTAGGTTATAAATCTTGTTGGCATGACAAGATTACTGGTTCTCTTTTTACATGTGAAGTTTTGGAGGGTGGTGATTCTGGACCTATATTTAGGATCCAGAGGTGTTCCTGTTCCGAATTTCCTGTTCCAGTTGGGTCAACCATCCTTTCATTGTCAAAATGTTGTCAACTTGCAAGTCAAGCTGATGAAGGCGATGGAAAAACTAATGGTAGTATGGATTTGGATGATGGTGATAATATCCAGATGATGCTTCAAGACCCTTGTGTACCAACTGAAAATGATGTCCTAAGTTGCTCTGCAAACTTCTCAATTAAGGATACTCATACACCAGATGCATTAGGCCCTGCGACTGGTTCAGTTCAAGATAATGTTATAAATTCTTTAGCTGGTGAGTTTAATGATGGAATTGGTGAATTTTGTGTGGAAGAGCGGTCATCGTGCTCTGCATGGAGAGTTATTTCTCAGAAGTTAGTTAATGCTTACAAGGATTTCTGCAAACAGAAAGGAACTCTCAAGTTCTATTGTAACCATGTTAAGAATGAAACATGCTTACATCAATGGGATTTAGGGAATGTAAAAAGTGATGCGTTGGATAAATTTTGTGGTTCCCTCAGTTCAGTTGGCATCCCAGATGTAATTTATGCAGACAGTGATCTGGAAGGTATCTCTGAGGCTTTGAGAAAATGGTTGGAGCAGGATAGGTTTGGATTGGATGTTGAATTTGTTCAAGAAGTATTGGAACAGCTTCCTGGCGTTGAATCTTTGCAGTATGAACTTTTAAATTGTAGAGATAACAGCTCGTCATTGCCAACAGTAGAAAATGGTTTCTTAGTAGTTGAATGGAGGGATGGGTCAAAAAATCAGGAAGAAGCACTTCAAGGTTTATACAGGAGGTCCAAAAAGGCAAGTTTGACTAAAAAAAGCTTTAAGGAAGGTCGTCGTCCACCACTTGGGAAGCCATTATGCTCCAGGGCTCCGGGTGAGCTCATTGGTGACATTTTTCAGGCTTGGGAACTTTTAGAGCGATTTAACGAAGTTCTGGACTTGCAAGAACCATTGTCATTAGATGGGCTTGAGAAGGAACTAATTAACCCTTGGTTTGATGGATTGGATTTTCTTGAGAAATCAGAGAGGGACATGGACGAAAGACAAGTTTTAATTTCCCAAGGAACTGATGGTAGTTGCAGACCATTATTGTCCCCAGGAAGTGATACTGGTCCATCAGGTCCCATGGAAAGTTCTCATGCATTTATTCAAATGGAAACTGAAGCAATGAAGGAGGCTGCTCAAGTTAAGCTCGCATCTTTCACTTATGCCAGATGCTTTGGTGTAACTTTGACCAAGGCTCATAATTCACTGCTGAGAGTGCTAATAGGTGAATTGCTATCAAGGGTGGCTGTCCTGGTGGATCCAAATTCTGAACCTGGAGAAACACGAACAAGACGGGGAAGAAAGAAAGATATGGATAGTGGTCTTCCTGCTAAACGAACCAAACTGAACATGCTTCCTATTAATGAGTTGACCTGGCCAGAATTAGCTCGGAGATATATCTTGGCTTTTTTAACAATGGATGGCAACCTTGAGTCTGCAGAAATTACTGCCCGTGAAAGTGGTAAAGTATTTCGCTGCTTACGAGGTGATGGTGGTTTGCTGTGTGGTGCTCTTACTGGTGTGGCGGGAATGGAAGCAGATGCACAGCTGCTTGCAGAGGCTACAAAGAAAATTTTTGGTTCTTTGAACAGACAAAGTGATGTACTAACTATGGAAGAAGAAGAGTCTGATGCAAAGGTTGCTTCTGAGAAAAATTTGGCAAATGATGGTAATGTTCCTGAATGGGCTCAAATGCTAGAACCTGTCAGAAAGCTACCAACAAATGTGGGTACTCGAATAAGAAAGTGTGTTTATGATGCTCTGGGTAAGGATCCACCAGAATGGGCAAGGAAAAAATTGGAACATTCAATTAGTAAGGAAGTGTACAAGGGCAATGCTTCTGGACCAACAAAGAAAGCAGTTCTTTCAGTGTTGGCTGATGTTGCTGGTGAAGGACCGCAATCAAATCCCAGTAAAGGACAGAAAAGGAAGATTGTTATATCAATTTCTGACATTATGATGAAACGATGTCGCATTGTATTACGGCGTGCTGCTGCTGCCGATGATTCAAAGGTTTTTTGCAATTTGCTGGGAAGAAAATTGATAAATTCTTCAGATAATGATGATGAGGGGCTTCTTGGTTCTCCGGCCATGGTGGCCCGCCCTATTGACTTCCGCACTATTGACCTTAGACTAGCTGCCGGAGCTTATGGTGGATCTCATGAAGCTTTTCTTGAGGATGTCCGGGAGCTGTGGAACAATGTTCGTGTTGCTTTTGGGGATCAACCTGATTTACTCGAATTGGCTGAAAAATTATCCCAAAACTTTGAATCTTTATATAATGAGGAGGTTGTCATGAATGTGCAAAAACTGATGGAGTATGCTAAACTGGAATGCTTAACTGCAGAAATGAGAAAGGAAGTTGATGATTTTATTGAGTCAATGAAAGAAACTCCAAAGGCCCCTTGGGATGAGGGAGTCTGTAAAGTATGTGGCATTGATAGGGATGATGATAGTGTTTTACTATGCGATACTTGTGATGCTGAGTATCATACATATTGCTTAAACCCTCCCCTCGCAAGGATCCCTGAGGGAAACTGGTACTGTCCTTCCTGTGTTGATGGTAAACATGCAACTCAAGATGTTACAGAACGTACACAGGTTATTGGCAAACGCCGAAGTAAAAAATTCCAGGGTGAAGTTAATTCTCTTTACTTGGAATCCCTTACTCATTTATCAGCTGTAATTGAAGAAAAAGAATACTGGGAGCACAGCTTGGCCGAGAGAACTTTCCTTCTCAAATTTTTATGTGATGAGTTGCTTAACTCTTCCATGATACGCCAGCACCTTGAACAATGTGCAGAGTTGTCTGCTGAGTTACATCAGAAATTGCGTGCACATTCTGTAGAGTGGAAAAACCTGAAAACCAGAGAGGACGTTTTGTCCACAAAAGCAGCTAAAATTGATACTTTCTCATTAAATACTGCTGGAGAAGTTGGTCTTAGGGAAGGGGTTACTACTTCATTTTCAAATACTGCTAAATGTGTGGTCCAGCCACATACTGCAGTTGACAATCCTAGTAATTTTGGGGTATTTGTTGATGGTCTGCCTTCAGAAGAGACAACTAAAGAGAAGTATAGGTTTGATAGTGTAGATAAAAGCATATCTGTGACAAATTCAGATTCCGATAGCCAAAATTTGAATTCCTTAGATGTAGAGGGACAATTTAGAAATGTCTCTGGTGCTGTGGAGTCTCAATGTACTGATAAATCTCCCAAATCTTTTCCATCACCAAATATGTCTCAAGAAATAAATGGTTCTGTTGGAGCAGCTGATGCACAGGGTAACCACCATAAATGTGAGGGAAGGGACATGTCTACACCTGTGACATGCCAGCAAGGTGGGGTGCCAGTTGATGCTTCACATATGGTTTTGAACGAGTCAGAACCCTATCACCTTGAGCTCAATGCCATCAAGCGTGATATTTCACTATTGCAGGAGTCCATAACTAATGTAGTATCACAGCTGCTTAGGCTCTCTGTTCGCCGGGAATTTTTGGGCATTGATTCCATCGGTCGATTGTATTGGGCTTCAACTTTGCCAGGAGGACATTCACGTATAGTTGTTGATGCAAGTGCTGCACTGCTTCATGGAAAAGGAATGTCATTTAGCAGAGACTATGTGGAGAAGTTTTCTGTTCTGCAGAATTGTTCACTAACTGAGAAGGATTCCTCTCCTTTCATGTCTCAGCTTAGAAATGCTTTGGTCAATAGTGCACCATGGATTGCTTATGAAACTGATGCTGAAATTGAAGAGCTCTTAGGTTGGCTGGACGATAATGACCCTAAAGAAAGGGAACTGAAAGATTCCATTATGCAGGGGCCAAGATCAAGATTCCAAGAGTTCCTTAATGGGAAGACCGAAGAGCAGGTTGAGGACCAGGGACCTGTTTCTATTCCCGGAAATAGAGAGAAAACAATATCTAACTCTCTTGTTACAAAGGCGACTTCCTTGCTGGAAAAGAAATACGGTCCCTTCTTTGAGTGGGATATTGAGACGTGGAAGAAGCAAAATAAAAAGTCCAGAACAACTGATGATGAAAAGTTGTTTAGGTGTGAGTGCCTTGAACCCATATGGCCCTATAGGAGACACTGCACATATTGTCACAAAACTGTTTTGAGTGATGTTGAATTTGATGGACACAACGATGGCAAGTGTAATGCAGGTCTTCCGGTTGCAGAGAAGAATAGGAACAAAATTGGATCTTCTAAAGGAAAAGGGAACTTAAGATGTGATACCTCACGAGAGAAATTCAGTGCTGATGCAGAGACAGCTGGAACCAAAATTGGTGGTGGTTCTAAGCTTAGCTCAAGAGTGATTAAATTTTCAAATGAAGAATCCACATGCCCATTTAATTTTGAAGATATATGTTCCAAGTTTGAGACAAATGATTCCAACAAGGAACTTGTCAAAGAAATAGGTCTTATTGGTTCAGATGGTATCCCTTCCTTTGTTCCTTCTGTATCTCCTTTTGTTATCGAGTATGCACAATTCTCAACTTCAAAGGATGACATTATTGGTGTTTTGTCCAAACCAACGGAAAGCTGGGGTTCTCAGGGAAATACTGATGGAGCTGGTGCATGTCTTGACCATAACTCAGGCATTTCTACTGGTAGGTTAGCTGCCAACGAAAGCAATAAATCCATTAAATCATCCTCGGGAGAACAAAGAGATGGGAAATTCCCTTTTTGTGGTCCTGTTTCAGATATGGGAGATGGCTGTTGTGTGGTTCCTTTGTCGTCATTGAAACCATTAGTTGGAAAGGTTTCTCACATCTTGAGGCAACTGAAGATTAATCTGCTTGACATGGATGCTGCACTCCCGGCATTTGCTCTGAGACCATCAAAGGCCGAGTCTGACAGAAGACAGGCTTGGCGTGCATTTGTGAAATCTGCAGAGACTATATACGAGATGATTCAGGCGACATTTACCTTAGAAGATATGATTAAGACGGAGTACTTGAGGAATGACTGGTGGTACTGGTCATCATTCTCAGCTGCTGCGAAATCTTCTACTTTGCCTTCCCTTGCCCTTCGCATATACTCTCTTGATTTAGCCATTATATACGAGAAAACGCCCAATTCTAGTCTTACTGATAGCTCTGAACCTTCTGGCACAGCAGAGACGAGACCCCCGATGAATGTGGATGCAGAGAAATCCAAAGGAAGCCGGAAGTCAAACAGGAAAAGGAAGGAATCAGATGGTTGA 6618 0.4364 MIMELPDSTGGDRNLNAPPPPPPPQHNNHHQDARSGLGIDLNEIPSPSSLFPETLPDSVTDVVRTYHENPGPPPGAPASLPSGGLAPCAACSKPCPTAAGSHHHLVVCDGCERGFHLACAGIRGGGRQAASLEEWVCGECVASGVKSKRWPLGVKQLLDINAPPPSEAEAEGVGEGDVHDLRKQTLGDNYFGASPFGAPVTYSNFYNGNGTGFQKASGGLTQADRVGFEDILNHTQSITRKFEEALKDFISERRGVLEEGWRVEFRQSVSSSELYAVYCAPDGKIFDSVYEVACYLGLMSGFNAVESEIRNERSLVSLGGSLSRKKKSTRSPVVNGFMEKRGTMMNSNCKDPSSEGLNVECASTRGNIAKPYESGRKEDGQSFPQQFEDELPLQFKDFFVLSLGKVDVRPSYYDVNLICPVGYKSCWHDKITGSLFTCEVLEGGDSGPIFRIQRCSCSEFPVPVGSTILSLSKCCQLASQADEGDGKTNGSMDLDDGDNIQMMLQDPCVPTENDVLSCSANFSIKDTHTPDALGPATGSVQDNVINSLAGEFNDGIGEFCVEERSSCSAWRVISQKLVNAYKDFCKQKGTLKFYCNHVKNETCLHQWDLGNVKSDALDKFCGSLSSVGIPDVIYADSDLEGISEALRKWLEQDRFGLDVEFVQEVLEQLPGVESLQYELLNCRDNSSSLPTVENGFLVVEWRDGSKNQEEALQGLYRRSKKASLTKKSFKEGRRPPLGKPLCSRAPGELIGDIFQAWELLERFNEVLDLQEPLSLDGLEKELINPWFDGLDFLEKSERDMDERQVLISQGTDGSCRPLLSPGSDTGPSGPMESSHAFIQMETEAMKEAAQVKLASFTYARCFGVTLTKAHNSLLRVLIGELLSRVAVLVDPNSEPGETRTRRGRKKDMDSGLPAKRTKLNMLPINELTWPELARRYILAFLTMDGNLESAEITARESGKVFRCLRGDGGLLCGALTGVAGMEADAQLLAEATKKIFGSLNRQSDVLTMEEEESDAKVASEKNLANDGNVPEWAQMLEPVRKLPTNVGTRIRKCVYDALGKDPPEWARKKLEHSISKEVYKGNASGPTKKAVLSVLADVAGEGPQSNPSKGQKRKIVISISDIMMKRCRIVLRRAAAADDSKVFCNLLGRKLINSSDNDDEGLLGSPAMVARPIDFRTIDLRLAAGAYGGSHEAFLEDVRELWNNVRVAFGDQPDLLELAEKLSQNFESLYNEEVVMNVQKLMEYAKLECLTAEMRKEVDDFIESMKETPKAPWDEGVCKVCGIDRDDDSVLLCDTCDAEYHTYCLNPPLARIPEGNWYCPSCVDGKHATQDVTERTQVIGKRRSKKFQGEVNSLYLESLTHLSAVIEEKEYWEHSLAERTFLLKFLCDELLNSSMIRQHLEQCAELSAELHQKLRAHSVEWKNLKTREDVLSTKAAKIDTFSLNTAGEVGLREGVTTSFSNTAKCVVQPHTAVDNPSNFGVFVDGLPSEETTKEKYRFDSVDKSISVTNSDSDSQNLNSLDVEGQFRNVSGAVESQCTDKSPKSFPSPNMSQEINGSVGAADAQGNHHKCEGRDMSTPVTCQQGGVPVDASHMVLNESEPYHLELNAIKRDISLLQESITNVVSQLLRLSVRREFLGIDSIGRLYWASTLPGGHSRIVVDASAALLHGKGMSFSRDYVEKFSVLQNCSLTEKDSSPFMSQLRNALVNSAPWIAYETDAEIEELLGWLDDNDPKERELKDSIMQGPRSRFQEFLNGKTEEQVEDQGPVSIPGNREKTISNSLVTKATSLLEKKYGPFFEWDIETWKKQNKKSRTTDDEKLFRCECLEPIWPYRRHCTYCHKTVLSDVEFDGHNDGKCNAGLPVAEKNRNKIGSSKGKGNLRCDTSREKFSADAETAGTKIGGGSKLSSRVIKFSNEESTCPFNFEDICSKFETNDSNKELVKEIGLIGSDGIPSFVPSVSPFVIEYAQFSTSKDDIIGVLSKPTESWGSQGNTDGAGACLDHNSGISTGRLAANESNKSIKSSSGEQRDGKFPFCGPVSDMGDGCCVVPLSSLKPLVGKVSHILRQLKINLLDMDAALPAFALRPSKAESDRRQAWRAFVKSAETIYEMIQATFTLEDMIKTEYLRNDWWYWSSFSAAAKSSTLPSLALRIYSLDLAIIYEKTPNSSLTDSSEPSGTAETRPPMNVDAEKSKGSRKSNRKRKESDG* 2206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0136 2205 CDD PHD_SF 88 140 - -
Vra1g0136 2205 MobiDBLite consensus disorder prediction 2164 2178 - -
Vra1g0136 2205 Gene3D - 1119 1241 IPR036427 GO:0005515
Vra1g0136 2205 MobiDBLite consensus disorder prediction 811 832 - -
Vra1g0136 2205 ProSiteProfiles Zinc finger PHD-type profile. 1275 1325 IPR019787 -
Vra1g0136 2205 MobiDBLite consensus disorder prediction 891 912 - -
Vra1g0136 2205 MobiDBLite consensus disorder prediction 2184 2205 - -
Vra1g0136 2205 MobiDBLite consensus disorder prediction 64 83 - -
Vra1g0136 2205 SUPERFAMILY Bromodomain 1112 1232 IPR036427 GO:0005515
Vra1g0136 2205 ProSiteProfiles Zinc finger PHD-type profile. 85 143 IPR019787 -
Vra1g0136 2205 SUPERFAMILY FYVE/PHD zinc finger 84 152 IPR011011 -
Vra1g0136 2205 MobiDBLite consensus disorder prediction 895 912 - -
Vra1g0136 2205 ProSitePatterns Zinc finger PHD-type signature. 1278 1322 IPR019786 -
Vra1g0136 2205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1262 1346 IPR013083 -
Vra1g0136 2205 MobiDBLite consensus disorder prediction 2164 2205 - -
Vra1g0136 2205 Pfam Bromodomain 1166 1221 IPR001487 GO:0005515
Vra1g0136 2205 Gene3D - 391 493 - -
Vra1g0136 2205 SUPERFAMILY FYVE/PHD zinc finger 1266 1327 IPR011011 -
Vra1g0136 2205 Pfam PHD-finger 1277 1323 IPR019787 -
Vra1g0136 2205 CDD Bromodomain 1123 1230 - -
Vra1g0136 2205 Pfam Methyl-CpG binding domain 248 299 IPR001739 GO:0003677
Vra1g0136 2205 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 1357 1401 IPR028942 -
Vra1g0136 2205 ProSiteProfiles Bromodomain profile. 1168 1216 IPR001487 GO:0005515
Vra1g0136 2205 PANTHER METHYL-CPG-BINDING DOMAIN-CONTAINING PROTEIN 9 34 2205 - -
Vra1g0136 2205 PANTHER OS02G0192300 PROTEIN 34 2205 - -
Vra1g0136 2205 MobiDBLite consensus disorder prediction 1 55 - -
Vra1g0136 2205 Coils Coil 1396 1416 - -
Vra1g0136 2205 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 84 146 IPR013083 -
Vra1g0136 2205 ProSiteProfiles FYR domain FYRN motif profile. 390 443 IPR003888 GO:0005634
Vra1g0136 2205 SMART PHD_3 87 141 IPR001965 -
Vra1g0136 2205 SMART PHD_3 1277 1323 IPR001965 -
Vra1g0136 2205 CDD PHD1_Lid2p_like 1277 1322 - -
Vra1g0136 2205 ProSitePatterns Zinc finger PHD-type signature. 88 140 IPR019786 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0136 Vra-Chr1 1575616 1590791 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0136 31 2205 C2H2 Transcription Factor Family AT3G01460 44.795 0.0 1712
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra1g0136 Bromodomain 4.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0136 K22768 - gmx:100820223 3461.39