Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0118 ATGAATGCTTCAAAGTCCTTTCAGAAAAGGCATGAAGGTTGCTCCCGTAGTCTTTCTTCTGGCAAAGAATTGAGTGAAGTGTTTGTGAAACGCAGGAAGGTGAATCAAGCATTGGTGACATTCAAGAACTTGATTGACAAATTAATGTATCAGTATAAAGTGTACGAATCTGAGAATTCTATGGCTAAGAATAAGAATAAAGCTCTGATGGAAGCAGCAATGACAATGAGAAGAGAACATCAATGGGAGAACACTCAAAAGTGCGTGGGACATATACTAGGAATCGATGTGGGTGATATTTTTCAGCACCGGGTTGAACTCAATGTCATTGGCCTCCATAGACAGTTTTGGAATGGAATTGATTATAAGATAATGGACAACAGTTTGTTGGCCACAAGCATCGTGGTAACACATCGCCATGATAATGTTAGAAGATCTAATGGTACCTTGGTTTATGAAGGTGAAGGAGGAAATCCCGATGTTGGAAGAAATGTTCCACTTCGTGATCAAAAACTGAAAGGAGGAAATTTGGCACTGAAAAATAGCATGCAAGCTAGAAGTCCAGTGAGAGTTATATTGAAAGTTAGTGGAAAGTTTGATGCTGCATTCAGTTGCAATAGGAGTAATTCTGATTTCTCATACGTTTATGATGGTTTGTATTTGGTGGATACAATGAACATAGAAAGAGGGAAATATGGAAAGCTTGTGTTCAAGTTTGGACTGAATAGAATTTTAGGACAACCTGAAACTTGTGTTTCCCTTAAGGACCATGGGGAAAATTCAAGGCAACTTGCAAATTTTAGTACTAGGAAGAAACTCGAGCCGAAAGTTTGTGTTGCTGAAAAGGAGGTTGTTCGAGTTAAAGATCTTTCAAATGGTAAGGAGAAGTTTACTATTAGGGTGGTGGCTCCAATTGATTGTGTTGAGCTACCCACATCCTTTGATTATGTTGTAAGTAACATTTACTCAGAGAAGTTCGAGCAGAAAATTGTGTCTGCTTCAGGAAGAAAAAGGGTAGCAAAATGCCGAATGGTTGTAATAAAAGACTTGCTTCTGAGATGGAATCATCGCTTATATATGAGTGTGGCCCATCTTGCAAGTGCTCCTCTTCTTGCATCAACCGAGTAA 1128 0.3892 MNASKSFQKRHEGCSRSLSSGKELSEVFVKRRKVNQALVTFKNLIDKLMYQYKVYESENSMAKNKNKALMEAAMTMRREHQWENTQKCVGHILGIDVGDIFQHRVELNVIGLHRQFWNGIDYKIMDNSLLATSIVVTHRHDNVRRSNGTLVYEGEGGNPDVGRNVPLRDQKLKGGNLALKNSMQARSPVRVILKVSGKFDAAFSCNRSNSDFSYVYDGLYLVDTMNIERGKYGKLVFKFGLNRILGQPETCVSLKDHGENSRQLANFSTRKKLEPKVCVAEKEVVRVKDLSNGKEKFTIRVVAPIDCVELPTSFDYVVSNIYSEKFEQKIVSASGRKRVAKCRMVVIKDLLLRWNHRLYMSVAHLASAPLLASTE* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0118 375 SMART G9a_1 85 247 IPR003105 -
Vra1g0118 375 Gene3D - 71 265 IPR036987 -
Vra1g0118 375 SUPERFAMILY PUA domain-like 72 254 IPR015947 -
Vra1g0118 375 Pfam SAD/SRA domain 89 247 IPR003105 -
Vra1g0118 375 ProSiteProfiles YDG domain profile. 90 243 IPR003105 -
Vra1g0118 375 PANTHER - 7 333 - -
Vra1g0118 375 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR 7 333 - -
Vra1g0118 375 Coils Coil 52 72 - -
Vra1g0118 375 Gene3D SET domain 266 346 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0118 Vra-Chr1 1373969 1375142 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0118 44 334 Su(var)3-9 homologs AT1G73100 33.557 4.17e-34 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0118 - - vra:106754179 748.814