Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0117 ATGACAAGTATTCCATCTCACATGAGAGCTTGGATCTACTCTGAATATGGGAACATAGAAGAGGTTCTCAAGTTTGATCCTAATGTGCCCACACCACACCTCATGGAAAACCAAGTGCTCATCAAAGTTGTGGCTGCAGCCATTAATCCAGTAGATTATAAGAGAGCTCTTGGTCATTTCAAGGACATTGACTCTCCTTTACCAACTGCACCAGGGTACGATGTTGCTGGTGTGGTGGTGAAAGTGGGAAATCAAGTGAAGAAATTTCAGGTTGGAGATGAAGTTTATGGTGACATCAATGAGGTTACTCTGGACCATCCAAAGACTATTGGCAGTTTAGCTGAATATACTGCAGTTGAAGAGAAAGTATTGGCTCACAAACCCTCCAATTTGAGTTTTGTTGAAGCTGCAAGCCTCCCTTTGGCAATCATAACTGCTTATCAAGGACTTGAAACTGCTCAGTTCTCTGTTGGCAAATCTATACTTGTTCTGGGAGGAGCTGGTGGAGTTGGATCCCTTGTTATTCAGATCGCCAAACATATATTTGGTGCATCTAAGATAGCAGCTACTGGTAGTACTGGAAAACTGGAATTGTTGAGAAACTTGGGAACAGACTTGCCTATAGACTACACAAAAGAGAACTTTGAAGAACTTGCAGAGAAGTTTGATGTGGTGTACGATGCAGTAGGGCAGAGTGAAAGAGCATTGAAGAGTGTTAAAGAAGGTGGTAAAGTTGTGACAATAGTGGCACCTGCAACTCCACCAGCTATCCCTTTCTTGCTCACTTCTGATGGTGATTTGCTGGAGAAATTGAGACCTTACTTGGAGAATGGACAGGTGAAGCCAATATTGGATCCTAAGAGTCCCTTTCCATTTTCTCAGACAGTGGAAGCATTTTCATATTTGAAGACTAACAGAGCTACTGGGAAAGTGGTCATATATCCCATTCCATAA 954 0.4235 MTSIPSHMRAWIYSEYGNIEEVLKFDPNVPTPHLMENQVLIKVVAAAINPVDYKRALGHFKDIDSPLPTAPGYDVAGVVVKVGNQVKKFQVGDEVYGDINEVTLDHPKTIGSLAEYTAVEEKVLAHKPSNLSFVEAASLPLAIITAYQGLETAQFSVGKSILVLGGAGGVGSLVIQIAKHIFGASKIAATGSTGKLELLRNLGTDLPIDYTKENFEELAEKFDVVYDAVGQSERALKSVKEGGKVVTIVAPATPPAIPFLLTSDGDLLEKLRPYLENGQVKPILDPKSPFPFSQTVEAFSYLKTNRATGKVVIYPIP* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0117 317 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 2 317 IPR044626 GO:0016628
Vra1g0117 317 SUPERFAMILY GroES-like 5 163 IPR011032 -
Vra1g0117 317 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 131 257 IPR036291 -
Vra1g0117 317 SMART PKS_ER_names_mod 17 313 IPR020843 GO:0016491
Vra1g0117 317 CDD MDR_like_2 8 313 - -
Vra1g0117 317 PANTHER 2-METHYLENE-FURAN-3-ONE REDUCTASE-RELATED 2 317 - -
Vra1g0117 317 Gene3D - 15 313 - -
Vra1g0117 317 Pfam Zinc-binding dehydrogenase 202 313 - -
Vra1g0117 317 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 158 179 IPR002364 GO:0008270|GO:0016491
Vra1g0117 317 Gene3D - 150 264 - -
Vra1g0117 317 Pfam Alcohol dehydrogenase GroES-like domain 37 98 IPR013154 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0117 Vra-Chr1 1366905 1368506 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0117 36 258 Monolignol Biosynthesis Gene Families AT4G37980 24.901 4.26e-07 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0117 K18980 - gmx:100791274 496.508