Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0116 ATGGCAAGTACTCCTAGCATTCCGTCACACATAAAAGCTTGGGCGTATTCTGAATATGGAAACATAGAAGATACTCTGAAATTTGAATCCAACATACCTATACCACAGATCAAGGAAGACGAGGTGCTCATTAAGGTTGCTGCTGCAGCCCTTAATCCTGTAGATTATAAGAGGGCTCATGGCTATTTCAAGAACACCGATTCTCCCTTGCCGACTGTTCCTGGGTACGATGTTGCTGGTGTGGTGGTGAGAGTGGGAAGTGAAGTGAAAAAATTCAAGGTTGGGGATGAGGTTTATGGAGACATCAATGAGAATCCTATAAACAATCCAAAAAGTATAGGATCTCTGGCAGAGTATACTGCTGTTGAAGAAAAGGTATTGGCACACAAACCTTCCAATTTGAGCTTTGTAGAAGCTGCAGCTCTTCCTTTAGCCATCATCACAGCTTATCAAGGACTTGAAAGAATTGAGTTTTCTGCTGGCAAATCTATCCTTGTTCTTGGAGGTGCTGGTGGAGTTGGATCCCTTGTTATTCAGCTAGCGAAGCACGTTTTTGGAGCATCAAAGGTTGCAGCCACAGCCAGTACTGGGAAACTGGATTTGTTAAGGAACTTGGGAGCAGACTTAGCCATTGATTATACAAAGGGGCAGCTTGAAGAGCTGGAAGAAAAGTTCGATGTAGTGTACGATACAGTTGGGCAGAGTGAGATTGATAGAGCATTGAAGGCTGTTAAAGAAAATGGGAAAGTTGTGACAGTAGCAGCACATGGAAGTCCTTCAGGTATCTTTGTAATACGCATTTCAGATGGTACTGTGTTGAAGAAACTAGAACCATACTTAGAAAGTGGGAAGGTGAAGCCGATATTGGATCCTAAGAGTCCCTTTGCATTTTCTGAGACTGTGGAGGCATTTGCATATTTGAAGACTAACAGAGCCATTGGAAAAGTGGTCATACATCCCATCCCTTGA 969 0.4303 MASTPSIPSHIKAWAYSEYGNIEDTLKFESNIPIPQIKEDEVLIKVAAAALNPVDYKRAHGYFKNTDSPLPTVPGYDVAGVVVRVGSEVKKFKVGDEVYGDINENPINNPKSIGSLAEYTAVEEKVLAHKPSNLSFVEAAALPLAIITAYQGLERIEFSAGKSILVLGGAGGVGSLVIQLAKHVFGASKVAATASTGKLDLLRNLGADLAIDYTKGQLEELEEKFDVVYDTVGQSEIDRALKAVKENGKVVTVAAHGSPSGIFVIRISDGTVLKKLEPYLESGKVKPILDPKSPFAFSETVEAFAYLKTNRAIGKVVIHPIP* 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0116 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 134 261 IPR036291 -
Vra1g0116 322 Pfam Alcohol dehydrogenase GroES-like domain 40 102 IPR013154 -
Vra1g0116 322 Pfam Zinc-binding dehydrogenase 205 318 - -
Vra1g0116 322 ProSitePatterns Quinone oxidoreductase / zeta-crystallin signature. 161 182 IPR002364 GO:0008270|GO:0016491
Vra1g0116 322 Gene3D - 153 269 - -
Vra1g0116 322 SMART PKS_ER_names_mod 20 318 IPR020843 GO:0016491
Vra1g0116 322 PANTHER NADPH-DEPENDENT ALKENAL/ONE OXIDOREDUCTASE, CHLOROPLASTIC 1 322 IPR044626 GO:0016628
Vra1g0116 322 CDD MDR_like_2 12 318 - -
Vra1g0116 322 Gene3D - 18 318 - -
Vra1g0116 322 PANTHER 2-METHYLENE-FURAN-3-ONE REDUCTASE-RELATED 1 322 - -
Vra1g0116 322 SUPERFAMILY GroES-like 8 166 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0116 Vra-Chr1 1355488 1357127 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0116 1 317 Monolignol Biosynthesis Gene Families AT1G72680 25.356 2.04e-11 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0116 K18980 - gmx:100793908 528.865