Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0109 ATGCTAGACGAGGACGGAAACAAGGTCAAGATCACCACCACCACGCGCACCCGTAAGCTCGCCAAGGCGCGTCTCAGCAAACGTGCCGTCGAGCGCCGAATCATGGCAGAACCATCCACCGCCGCCGCCACATCCACCACGGCGGACCCTCCGCCGCCAGTTACCAAAAGATGGGCTGACGAAGAGGACGAAGAAACCGAAGCCTCCTCCACCGCCACCGCCACTGAAGCCTCTTCCGTCAACCTCGATTCATTAAAAATCGAAGACAACGATGAGAACCCTCCCAAACTCTTGGATGACCCCGACGATTCTAGCATTCAAAAGGTTACCTCTGGAGAAACGCCGTACACGTCGGCTGCGAAGTTCGAGGACTTAAACCTCTCGCCGGAGCTTCTGAAAGGGCTCTACGTGGAGATGAAGTTCCAGAAGCCGAGCAAGATCCAGGCGATAAGTTTGCCGATGATCCTCAACCCGCCGCACCGTGACCTCATCGCGCAGGCGCACAACGGGTCTGGGAAGACCACGTGCTTCGTGCTTGGGATGCTCAGCCGCGTCGATCCCAAGGTGCAGGCGCCGCAGGCTCTCTGTGTCTGCCCAACTCGGGAGTTGGCTAATCAGAACATCGAGGTTCTCCGCAAGATGGGNAAGTACACCGGGATTGCGTCGGAGTGCGCTGTGCCGACGGATAGCAATGCGCTCTCGATCGCGAAAAGGGCGCCGATTATGGCGCAGGTGGTGATCGGAACCCCTGGCACCATCAAGAAGTGGATGAGCTTCAAGAAACTTGGGGCCTCCAGGTTGAAGATTCTTGTTTTTGACGAGGCAGATCAAATGCTTGCGGAGGATGGATTTAAAGATGATTCCCTGAGGATAATGAAAGAAATAGAAAAAGTTAATTCTAATTGTCAGGTTCTTCTGTTTTCTGCTACATTTAATGACACCGTCAAAAATTTCGTTTCAAGGACAGTCAAAGAGGATCATAATAAACTTTTTGTAAAGAAAGAAGAACTATCTTTAGATGCAGTGAAGCAATATAAAGTCTACTGTTCTGATGAACTTGCGAAGATTGAAGTGATAAAAGATTACATATTTGAAATAGGAGAGAATGTGGGGCAAACCATCATATTTGTGCGTACAAGAAATAGTGCACAAATGTTGCATAAATCACTTGTTGACATGGGCTACGAGGTTACATCTATACAAGGTGCTCTTGGTCATGACGAGAGAGAGAAAATTGTTAAGGAGTTCAGAGACGGTTTGACTCAAGTTCTTATTTCAACTGATCTTCTTGCTCGTGGCTTTGATCAGCAACAGGTTAATTTGGTCATCAATTATGATCTTCCGATGAAACACACTGCCAGCTATACCCGTGAACCCGAGCCTGATTGTGAAGTGTATTTGCATAGGGTTGGCAGAGCTGGGCGTTTTGGGCGCAAAGGAGCTGTATTTAACCTGATATGTGATCAAAAGGATGAAAGGCTCATGTCGAAGATTGAGAATCACTTCGGCACTCGTGTAGCTGAGGTGCGAGCACAAAGTGTTGAAGACTATAAAGGTGCTCTCAAGGAAGCTGGTTTACTGCAATGA 1587 0.4883 MLDEDGNKVKITTTTRTRKLAKARLSKRAVERRIMAEPSTAAATSTTADPPPPVTKRWADEEDEETEASSTATATEASSVNLDSLKIEDNDENPPKLLDDPDDSSIQKVTSGETPYTSAAKFEDLNLSPELLKGLYVEMKFQKPSKIQAISLPMILNPPHRDLIAQAHNGSGKTTCFVLGMLSRVDPKVQAPQALCVCPTRELANQNIEVLRKMGKYTGIASECAVPTDSNALSIAKRAPIMAQVVIGTPGTIKKWMSFKKLGASRLKILVFDEADQMLAEDGFKDDSLRIMKEIEKVNSNCQVLLFSATFNDTVKNFVSRTVKEDHNKLFVKKEELSLDAVKQYKVYCSDELAKIEVIKDYIFEIGENVGQTIIFVRTRNSAQMLHKSLVDMGYEVTSIQGALGHDEREKIVKEFRDGLTQVLISTDLLARGFDQQQVNLVINYDLPMKHTASYTREPEPDCEVYLHRVGRAGRFGRKGAVFNLICDQKDERLMSKIENHFGTRVAEVRAQSVEDYKGALKEAGLLQ* 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0109 528 Pfam Helicase conserved C-terminal domain 355 477 IPR001650 -
Vra1g0109 528 Gene3D - 98 336 IPR027417 -
Vra1g0109 528 CDD SF2_C_DEAD 342 486 - -
Vra1g0109 528 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 154 329 IPR014001 -
Vra1g0109 528 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 358 518 IPR001650 -
Vra1g0109 528 PANTHER DEAD-BOX HELICASE DBP80 99 507 - -
Vra1g0109 528 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 495 IPR027417 -
Vra1g0109 528 SMART ultradead3 140 345 IPR014001 -
Vra1g0109 528 MobiDBLite consensus disorder prediction 85 103 - -
Vra1g0109 528 MobiDBLite consensus disorder prediction 1 110 - -
Vra1g0109 528 CDD DEADc_DDX19_DDX25 127 330 - -
Vra1g0109 528 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 99 507 - -
Vra1g0109 528 Gene3D - 339 521 IPR027417 -
Vra1g0109 528 Pfam DEAD/DEAH box helicase 146 317 IPR011545 GO:0003676|GO:0005524
Vra1g0109 528 SMART helicmild6 384 477 IPR001650 -
Vra1g0109 528 MobiDBLite consensus disorder prediction 70 84 - -
Vra1g0109 528 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 120 149 IPR014014 GO:0003724
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0109 Vra-Chr1 1298001 1302160 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0109 113 509 Eukaryotic Initiation Factors Gene Family AT1G72730 36.275 3.50e-70 229
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0109 K18655 - gmx:100784739 764.222