Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0105 ATGGGAGGTCTCGAAGATATCAAGAACGAGGCAGTGGATCTGGAGCGGATTCCTTTGGATGAAGTGTTCCGCGAACTGAATTGTACGAAGGAAGGTCTGACGAATGAGGAAGGCGACAAGAGGTTGCAGGTTTTTGGACCAAACAAGTTGGAAGAAAAGGAAGAAAGCAAGCTCCTTAAATTCTTGGGTTTTATGTGGAACCCTTTGTCATGGGTGATGGAAGCCGCAGCCATCATGGCCATTGCATTGGCAAATGGAGGGGGTGAGCCCCCAGACTGGCAAGACTTTGTTGGAATCGTGGTGTTGCTCTTTATCAACTCAACCATCAGTTTCATTGAAGAAAACAACGCCGGCAATGCTGCGGCGGCACTCATGGCAGGCCTTGCTCCGAAAGCGAAGGTTTTGAGAGATGGAAGGTGGTCTGAAGTGGAAGCTAGCATACTGGTACCGGGAGATATAATCAGCATCAAACTGGGTGACATCATTCCAGCTGATGCTCGTCTCTTGGAAGGAGATTCCCTCAAGATTGATCAGTCTGCACTCACGGGTGAGTCGTTACCTGTTACTAGGAACCCCGGCGATGAAGTCTTCTCTGGCTCCACCGTGAAGCAAGGAGAGATTGAAGCAGTTGTAATCGCTACTGGGGTTCATACCTTCTTCGGTAAGGCTGCTCACCTAGTCGACAGCACTAACCAAGTCGGGCATTTCCAAAAGGTGTTGACGGCCATTGGAAATTTCTGCATTTGCTCAATTGCTGTGGGGATGATCATTGAAATTGTGGTGATGTATCCAATTCAGCACCGCAAGTACAGGAGCGGAATCAACAACCTCTTGGTCCTTCTGATTGGAGGGATTCCCATTGCCATGCCTACAGTGTTGTCAGTAACAATGGCAATTGGTTCCCACAGGCTCTCTGAGCAAGGTGCTATCACCAAGAGGATGACAGCCATTGAGGAGATGGCTGGGATGGATGTTCTGTGCAGTGACAAGACTGGCACTCTAACACTTAACAAGCTTACAGTGGACAAGTCTTTGATTGAGGTTTTCTCAAAAGATGCTGACAAGGATACAGTAATTTTGCTTGGGGCTAGGGCCTCCAGAGTTGAAAACCAGGATGCTATTGATACTTGCATAGTTGGAATGTTGGGTGATCCAAAAGAGGCTAGAGATGGCATTACAGAGGTTCATTTTCTGCCATTTAACCCAGTGGACAAGCGCACAGCCATAACATACATAGACAGTGAAGGTAAGTGGTACAGAGTAAGCAAAGGTGCACCGGAACAGATTATCGAGCTCTGCAACCTTCGGGAAGAGGTGAAGAAGAAGGCTTTATCCATCATTGGTAAATTTGCTGATCGCGGTCTTCGTTCGCTTGCTGTGGCGAAACAAGAGGTGCCAGAAAAGACAAAGGAGAGTGCTGGAGGACCATGGCAGTTCGTGGGTCTGTTGCCACTCTTTGACCCACCAAGGCATGACAGTGCTGAGACTATACGGCGCGCTCTCCATCTAGGAGTTAACGTTAAGATGATTACAGGTGATCAGCTAGCCATCGGCAAGGAAACTGGTCGCAGACTTGGCATGGGAAGCAACATGTATCCTTCTTCATCCCTCCTCGGTCAGCATAAGGATGAGTCCATTGCTGCACTTCCCATTGATGAACTTATTGAGAAAGCTGATGGCTTTGCCGGTGTCTTCCCTGAGCACAAGTACGAGATAGTAAAGAGACTCCAGGAAAGGAAACACATTTGTGGGATGACAGGAGATGGTGTGAACGATGCTCCTGCACTCAAAAGAGCAGATATTGGAATCGCTGTTGCCGATGCAACTGACGCAGCTCGAAGTGCATCCGACATAGTTCTCACCGAGCCTGGCTTGAGTGTGATCGTGAGTGCTGTGTTGACAAGCAGAGCCATCTTCCAAAGGATGAAGAATTACACCATATATGCTGTTTCTATTACCATCCGAGTGGTGTTAGGGTTTATGCTGCTTGCTCTGATATGGAAGTTTGACTTCTCACCCTTCATGGTTTTGATCATTGCCATTCTGAATGATGGTACCATCATGACCATTTCCAAAGACAGAGTGAAGCCATCTCCAGTGCCAGATTCCTGGAAGTTAAGAGAGATTTTCATCACCGGCGTTGTTCTAGGCGCCTACCTAGCTATCATGACTGTTGTCTTCTTCTGGGCTGCTTATGCATCTAACTTTTTCTCAGACAAATTCGGAGTGAGATCCATCAGGGAAAGCCACGGCGAGCTCACGGCAGCTGTTTATCTTCAAGTGAGCATTGTAAGTCAAGCACTGATTTTTGTGACACGCTCAAGGAGCTGGTCTTACGTTGAACGCCCTGGTCTACTTCTTGTCGTTGCTTTTCTTATAGCACAGCTCATTGCCACACTCATAGCTGTGTATGCAAACTGGGGATTTGCAAAGATTAATGGCATTGGATGGGGTTGGGCTGGTGTGATTTGGCTCTACAGCATAATTTTCTACATTCCCATGGATATTCTGAAGTTCATCATCCGATATGGATTAACTGGAAAGGCTTGGAACAATATCACTGAGAGTAGGGTTGCTTTCAACTCAAAGAACGATTATGGAAAGGGAGAAAGAGAAGCACAGTGGGCTGTAGCTCAACGAACATTGCATGGGTTGAATCCACCTCAAACTGTTCATGAGATTTTGAATGAGAAAAACGACTACAGGGAGCTGTCTGAACTTGCAGAACAGGCCAAGAAGCGTGCAGAAGTTTCCAGGCTAAGGGAGGTTCATACTCTAAAGGGTCATGTTGAGTCTGTCGTGAAGCTCAAAGGAATTGACATTGATACAATCCAGCAGAACTACACGCTTTGA 2853 0.4711 MGGLEDIKNEAVDLERIPLDEVFRELNCTKEGLTNEEGDKRLQVFGPNKLEEKEESKLLKFLGFMWNPLSWVMEAAAIMAIALANGGGEPPDWQDFVGIVVLLFINSTISFIEENNAGNAAAALMAGLAPKAKVLRDGRWSEVEASILVPGDIISIKLGDIIPADARLLEGDSLKIDQSALTGESLPVTRNPGDEVFSGSTVKQGEIEAVVIATGVHTFFGKAAHLVDSTNQVGHFQKVLTAIGNFCICSIAVGMIIEIVVMYPIQHRKYRSGINNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSEQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLTVDKSLIEVFSKDADKDTVILLGARASRVENQDAIDTCIVGMLGDPKEARDGITEVHFLPFNPVDKRTAITYIDSEGKWYRVSKGAPEQIIELCNLREEVKKKALSIIGKFADRGLRSLAVAKQEVPEKTKESAGGPWQFVGLLPLFDPPRHDSAETIRRALHLGVNVKMITGDQLAIGKETGRRLGMGSNMYPSSSLLGQHKDESIAALPIDELIEKADGFAGVFPEHKYEIVKRLQERKHICGMTGDGVNDAPALKRADIGIAVADATDAARSASDIVLTEPGLSVIVSAVLTSRAIFQRMKNYTIYAVSITIRVVLGFMLLALIWKFDFSPFMVLIIAILNDGTIMTISKDRVKPSPVPDSWKLREIFITGVVLGAYLAIMTVVFFWAAYASNFFSDKFGVRSIRESHGELTAAVYLQVSIVSQALIFVTRSRSWSYVERPGLLLVVAFLIAQLIATLIAVYANWGFAKINGIGWGWAGVIWLYSIIFYIPMDILKFIIRYGLTGKAWNNITESRVAFNSKNDYGKGEREAQWAVAQRTLHGLNPPQTVHEILNEKNDYRELSELAEQAKKRAEVSRLREVHTLKGHVESVVKLKGIDIDTIQQNYTL* 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0105 950 TIGRFAM ATPase-IIIA_H: plasma-membrane proton-efflux P-type ATPase 32 804 IPR006534 GO:0008553|GO:0016021|GO:0120029
Vra1g0105 950 SFLD C1.7: P-type atpase like 309 638 - -
Vra1g0105 950 Gene3D - 339 486 IPR023299 GO:0000166
Vra1g0105 950 Pfam Cation transporter/ATPase, N-terminus 17 79 IPR004014 -
Vra1g0105 950 SMART Cation_ATPase_N_a_2 13 85 IPR004014 -
Vra1g0105 950 SUPERFAMILY Calcium ATPase, transduction domain A 130 227 IPR008250 -
Vra1g0105 950 Gene3D - 324 623 IPR023214 -
Vra1g0105 950 Coils Coil 894 921 - -
Vra1g0105 950 Pfam haloacid dehalogenase-like hydrolase 323 600 - -
Vra1g0105 950 SUPERFAMILY Calcium ATPase, transmembrane domain M 13 843 IPR023298 -
Vra1g0105 950 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 99 359 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra1g0105 950 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 561 671 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra1g0105 950 Pfam E1-E2 ATPase 129 306 - -
Vra1g0105 950 PRINTS P-type cation-transporting ATPase superfamily signature 177 191 - -
Vra1g0105 950 PRINTS P-type cation-transporting ATPase superfamily signature 327 341 - -
Vra1g0105 950 PRINTS P-type cation-transporting ATPase superfamily signature 481 492 - -
Vra1g0105 950 PRINTS P-type cation-transporting ATPase superfamily signature 503 513 - -
Vra1g0105 950 PRINTS P-type cation-transporting ATPase superfamily signature 586 605 - -
Vra1g0105 950 PRINTS P-type cation-transporting ATPase superfamily signature 609 621 - -
Vra1g0105 950 ProSitePatterns E1-E2 ATPases phosphorylation site. 329 335 IPR018303 -
Vra1g0105 950 Gene3D - 130 214 - -
Vra1g0105 950 CDD P-type_ATPase_H 32 839 IPR006534 GO:0008553|GO:0016021|GO:0120029
Vra1g0105 950 PRINTS H+-transporting ATPase (proton pump) signature 443 461 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra1g0105 950 PRINTS H+-transporting ATPase (proton pump) signature 558 574 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra1g0105 950 PRINTS H+-transporting ATPase (proton pump) signature 586 602 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra1g0105 950 PRINTS H+-transporting ATPase (proton pump) signature 617 642 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra1g0105 950 PRINTS H+-transporting ATPase (proton pump) signature 758 779 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra1g0105 950 SUPERFAMILY HAD-like 323 633 IPR036412 -
Vra1g0105 950 Gene3D - 899 950 - -
Vra1g0105 950 PANTHER CALCIUM-TRANSPORTING ATPASE 4 931 - -
Vra1g0105 950 PANTHER ATPASE 9, PLASMA MEMBRANE-TYPE 4 931 - -
Vra1g0105 950 SFLD p-type atpase 309 638 IPR044492 -
Vra1g0105 950 Gene3D - 92 813 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0105 Vra-Chr1 1263202 1266157 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0105 5 950 Primary Pumps ATPases AT2G07560 82.347 0.0 1593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0105 K01535 - gmx:100796240 1672.91