Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra1g0103 | ATGGCGGATGAGGAGCCAGTAAGAGGAAGGCGAAGGCCCAGGGGCCCGGAGTCCACCCCTCGCAGCGAAGCGTTGGAGCGTCTCAAAGCCCGCCGCGGTGATCGTCGATCCGATGGCACTGGCCTCCAAATCAGGTTAGAAAACCCTATCTACGACACTGTCCCTGAGGATGAGTACAATGCCCTCGTTGCCAAACGCCGTGAACAGGCGCGCTCCTTTATAGTCGACGATGAAGGAATCGGATACGGTGATGAGGGCGAGGAAGAGGACTGGTCTCAGGCCGGGTTCACTCTCTCCTCTGATGAATCCGAAGGTGAATTGGAGAGGCCGAAGCGGAAGAAGGTCAGGAAGAAGGATCACCAGCCGGAACGACCCTCTTCATCGCTCTCCGCGGCTGCGGCCATGATGGGAGGGCAGAAGTTGTTGTCCATGTTCACTAGCTCCGTTTTCAAGAGCAGAGACGACAAAGTCTGTGAGAGCATCGTCGAAGATGTTATTGCAGAGTTCGCTGCGGACGAGACTGATAGACTGAAGCGTAGAAGGGTGCAAGGGAATTCCTCTTCCACTTCTGATGCAAACAATGTTTTGCATGTTAATATGTTTAGGGATAAACCTTCTGTTGGTATGATGCAAAATTCTTCTTCATTGCCGGAACATGGTAACCCTGAGTCTGTTAAGGTATTTGCTGAGAGTGATGGTTTTTACTCGGGGTTTGAGCCAAAGAGTACAGTGGTTAGTGAAGTCCAAGATTTCGGGCGTGGTAGTTCTGAGAATGGACAGACACCGACGGTGGTAGCTGAAGATTCTCAAGTTAATGAATATATGGTTGAGGCGAAAGAGGTGAATAGTTTTCAAATTGAAGTGAAAGCGGATGCAAAGAAGGAGGTGTTCACTTTGAAGGCCAAGGTTAAAGAAGCTGACGACACTGCATTGTCTGCTACTGCTGGTTGGAAGGAACCAATATCCTTCGAATCAGCACCGCGTATATCTTCCTTCCAACACTCAGAGTTTGATCTGGAGGAAGATGGATCACTGCCTTTCTACATATTAGATGCGTATGAGGAGTTTCATGGGGAAAACAGGGGCACAATTTATCTCTTTGGGAAGGTTAAGACTGGGGATTTGTATCAGAGTTGTTGTGTTATTGTCAAGAGCATGCAGAGGTGTGTCTATGCAGTTCCTAGCCGACCCTTGCTTCGCACTGAAGAGATGATGAGTCTCGAGAGAGATGTCCAGGAGTCTCGAATTTCTTCAGAGGATTTCTTTAAAAAGTTGCGAGATGCAGTAGCTGATGTTAAGAAAGAGATAGCACAACATCTGGTGAATTTGGATGTTTCGAACTTTAGCATGGCACCTGTTAAGAGGAAATATGCATTTGATCGATTTGAAGTTCCTACTGGGGAAAATTATGTGGTGAAAATAAATTATTCATTCAAGGGTCCTGTACTTCCAGCAGATCTCAAAGGAGAAAGTTTCTGTGCTCTCTTAGGAACTAGTTGCAGTGCCCTTGAGCTTTTTCTGATTAAAAGGAAGATAAAGGGGCCTTCATGGCTACAGGTTTCAAAGTTTGCTACAAGCTCATCTTCCCCAAGGGTTAGCTGGTGCAAATTTGAAGTAACTGTTGACTCTCCTAAGAACATAAATACATCAGCTACTTCAAAAATCATTTCTAATATCCCTCCAGTGGTTGTTGCAGCAATAAACTTGAAAACCACCATAAATGAAAAGCAGAACATAAATGAGATTGTATCAGCATCCGTTGTCTGTTGTAACATGGTTAAGATTGATGCCCCTATGATGGCTTCAGAGTGGACGAAACCCGGAAGGCTGACCCATTTTACTGTTGTTCGTCGACTTGATGGGGGCATATTTCCAATGGGATTCGAGAAGGAGGTTACGGACAGAAACTTAAAAGCTGGTTCAAAGATTCTGTGTGCTGAAACCAGTGAAAGAGCTTTATTGAACCACTTGATGTTAGAATTGCACAAGTTGGATTGCGATGTTCTGGTTGGACATAATATATCTGGATTTGACCTGGATGTTCTTCTCCACAGATTCGAGGCCTGCAAAGTGGCAAGCAGCATGTGGTCTAAACTAGGCCGCCTCAACCGATCGACTATGCCTAAACTTGGAAGAAGAAATAAGGTTTTTGGTTCTGGAGCTGATCCTGGTATCATGTCATGCATTGCTGGCAGGCTTCTTTGTGATACATACTTGTGTTCCCGTGACCTATTAAAGGAGGTTAGTTACTCTTTAAGTCACCTTGCAAAATCACACCTGAACAAGTTTCGGAAGGAAGTTGCTCCACATGAAGTTCCAAAAATGTTCCAGTCAGCAGAATCGCTAATGGAGCTTATTGAATACGGTGAAACAGATGCATGGTTGTCTATGGAACTAGTTTTTTATTTAAATATTCTTCCACTCACCCGTCAGCTGACTAATATAAGTGGTAATCTGTGGGGGAAAACTCTTCAGGGTGCTCGAGCACAGAGGGTTGAATATATTTTTCTGCATACTTTCCATGCAGCGAAATATATGGTGCCAGACAAGTTCTCAAACTATTCTAGAGAAACGAAATTGACGAAACGTAGACTAACCCACGATGCTGAAGATAGCAACTACGATGTAGATGTTGACGATGTAAACTATGACAATGATGCTTCTGAAGCTGATAATAAGAAAAGCAAAAAGGGTCCTTCTTATGCTGGGGGACTGGTTTTGGAGCCAAAGAAGGGTCTATATGACAAATATATACTGCTGCTGGATTTCAACAGTCTTTATCCTTCTATTATTCAGGAATACAATATTTGCTTTACAACTGTTGAAAGATCTTTGGATGGATCTTTTCCACGTCTACCATCTAGTAAAACAACTGGAGTCTTGCCAGAGGTGCTGAAAAATTTGGTAGATAGGAGGAAGAGGGTAAAGTCGTTGATTAAGAATGAAAAAGAGAAGAATGAAAAAGCTGATCCTATAACGGTTCAGCAACTGGATATTCGGCAGCAAGCACTTAAGCTTACTGCTAACAGTATGTATGGGTGCCTGGGATTTTCCAATTCAAGATTTTATGCTAAGCCGTTGGCTGAGCTTATTACTTTACAAGGAAGGGAGATACTGCAGAGTACTGTTGATTTAATTCAGAATGCCTTGAATTTAGAGGTGATCTATGGCGACACCGATTCAATAATGATTTACAGTGGGCTGGATGATATTGAGGAAGCTAATAAAATTGCTGTAAAAGTTATTCAAGAGGTCAATAAGAAATATAAATGTTTGGAAATTGATCTTGATGGTTTATATAAAAGAATGCTGCTTCTCAAGAAAAAGAAGTATGCAGCTGTAAAGTTGCTGTTTAAAGATGGCACCCCATATGAGGAGGTGATTGAACGAAAAGGTCTTGACATTGTTCGTCGTGACTGGAGCTTATTAGCTAAAGAATTAGGAGATTATTGCTTGACTCAAATTTTGTCTGGAGGGTCATGTGAAGATGTAGTGGAGTCAATCCACAACTCGCTCATAAAGGTACAAGAAGAAATGAGGAACGGACAAGTACCATTAGAGAAATATGTCATTATGAAGACATTGAATAAACCCCCTGAAGCTTATCCCGATGCCAAGAACCAGCCACATGTTCTTGTGGCACAAAGACTGAAGCAACAAGGTTACTCTTCTGGCTGTTCTGTTGGAGATACAATCCCGTATATAATTTGTTATGAACAGGGTGGCAGTTCAGGCAGTGCTGGTGGCATTGCTCAACGTGCTAGACATCCTGAAGAACTTAAACGGGAACAAGGGACATGGATGATTGACATTGATTACTATTTATCACTACAGATCCATCCCGTAGTATCACGCCTTTGTGCATCAATTCAGGGAACAAGCCCAGAAAGACTGGCTGATTGCTTAGGGCTTGACTCCTCAAAGTTTCATCATAAATCAAGTGAAGCTTTTACTGATGATTCTAGCAATTTACTCTTGTCTGCAGCTAATGATGAGGAGAGGTATCGGGGATGTGAGCCATTGGTCTTGTCATGCCCCAGCTGCTCTGGTACATTTGACTGCCCACCCGTCTCTAAATATATTTGCTGCTTGTTGGGAAGTGGAATGACAACCAGCGTATCCACCAAGGAATCTGACTTCAATTTCTGGCGTAAGCTGTGTTGTCCTAAATGCCCCGAAGATATCAAAATTTCTCCAGGGATGATAGCGAATCAGGTCAAATGGCAAGCAAAGATGTTTATTTTGATGTTCTATGAAGGTTTACGAACGTGTGATGATGAAACGTGTAAGCATACAACACGACTTATCAGCCATCGGTTTGTTGGTGGTTTCGAGAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGTCGTCTGCTTAGAAAGTACACTCAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCACGTGTTTGACACTGTTTCTTGTATAGAAAAGATGGAGGCCAAATCTAAAAAAACTATAGCGAAAGAGGTGATAAAAATTAGGCGGATGATTCATCCAGCAGCTTCAACAGCGCAGAAGATCAGGGACCAATGTCCCTTTGGTTGGGTGAGACTGGAGGATCTGGTCGTATCAGTTTAA | 4611 | 0.4316 | MADEEPVRGRRRPRGPESTPRSEALERLKARRGDRRSDGTGLQIRLENPIYDTVPEDEYNALVAKRREQARSFIVDDEGIGYGDEGEEEDWSQAGFTLSSDESEGELERPKRKKVRKKDHQPERPSSSLSAAAAMMGGQKLLSMFTSSVFKSRDDKVCESIVEDVIAEFAADETDRLKRRRVQGNSSSTSDANNVLHVNMFRDKPSVGMMQNSSSLPEHGNPESVKVFAESDGFYSGFEPKSTVVSEVQDFGRGSSENGQTPTVVAEDSQVNEYMVEAKEVNSFQIEVKADAKKEVFTLKAKVKEADDTALSATAGWKEPISFESAPRISSFQHSEFDLEEDGSLPFYILDAYEEFHGENRGTIYLFGKVKTGDLYQSCCVIVKSMQRCVYAVPSRPLLRTEEMMSLERDVQESRISSEDFFKKLRDAVADVKKEIAQHLVNLDVSNFSMAPVKRKYAFDRFEVPTGENYVVKINYSFKGPVLPADLKGESFCALLGTSCSALELFLIKRKIKGPSWLQVSKFATSSSSPRVSWCKFEVTVDSPKNINTSATSKIISNIPPVVVAAINLKTTINEKQNINEIVSASVVCCNMVKIDAPMMASEWTKPGRLTHFTVVRRLDGGIFPMGFEKEVTDRNLKAGSKILCAETSERALLNHLMLELHKLDCDVLVGHNISGFDLDVLLHRFEACKVASSMWSKLGRLNRSTMPKLGRRNKVFGSGADPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLSHLAKSHLNKFRKEVAPHEVPKMFQSAESLMELIEYGETDAWLSMELVFYLNILPLTRQLTNISGNLWGKTLQGARAQRVEYIFLHTFHAAKYMVPDKFSNYSRETKLTKRRLTHDAEDSNYDVDVDDVNYDNDASEADNKKSKKGPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSLDGSFPRLPSSKTTGVLPEVLKNLVDRRKRVKSLIKNEKEKNEKADPITVQQLDIRQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLIQNALNLEVIYGDTDSIMIYSGLDDIEEANKIAVKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLLFKDGTPYEEVIERKGLDIVRRDWSLLAKELGDYCLTQILSGGSCEDVVESIHNSLIKVQEEMRNGQVPLEKYVIMKTLNKPPEAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICYEQGGSSGSAGGIAQRARHPEELKREQGTWMIDIDYYLSLQIHPVVSRLCASIQGTSPERLADCLGLDSSKFHHKSSEAFTDDSSNLLLSAANDEERYRGCEPLVLSCPSCSGTFDCPPVSKYICCLLGSGMTTSVSTKESDFNFWRKLCCPKCPEDIKISPGMIANQVKWQAKMFILMFYEGLRTCDDETCKHTTRLISHRFVGGFERGTVCPNYPRCNGRLLRKYTQADLYKQLSYFCHVFDTVSCIEKMEAKSKKTIAKEVIKIRRMIHPAASTAQKIRDQCPFGWVRLEDLVVSV* | 1537 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra1g0103 | 1536 | SUPERFAMILY | Ribonuclease H-like | 447 | 841 | IPR012337 | - | |
Vra1g0103 | 1536 | Gene3D | - | 347 | 546 | - | - | |
Vra1g0103 | 1536 | MobiDBLite | consensus disorder prediction | 1 | 42 | - | - | |
Vra1g0103 | 1536 | ProSitePatterns | DNA polymerase family B signature. | 1056 | 1064 | IPR017964 | GO:0000166|GO:0003676 | |
Vra1g0103 | 1536 | Gene3D | Palm domain of DNA polymerase | 887 | 1117 | IPR023211 | - | |
Vra1g0103 | 1536 | Coils | Coil | 1068 | 1102 | - | - | |
Vra1g0103 | 1536 | Gene3D | - | 560 | 876 | IPR036397 | GO:0003676 | |
Vra1g0103 | 1536 | CDD | DNA_polB_alpha_exo | 560 | 811 | - | - | |
Vra1g0103 | 1536 | MobiDBLite | consensus disorder prediction | 77 | 131 | - | - | |
Vra1g0103 | 1536 | Gene3D | Helix hairpin bin | 963 | 1014 | - | - | |
Vra1g0103 | 1536 | MobiDBLite | consensus disorder prediction | 1 | 41 | - | - | |
Vra1g0103 | 1536 | CDD | POLBc_alpha | 894 | 1305 | IPR045846 | GO:0003887|GO:1902975 | |
Vra1g0103 | 1536 | Coils | Coil | 965 | 985 | - | - | |
Vra1g0103 | 1536 | Pfam | DNA polymerase family B, exonuclease domain | 377 | 753 | IPR006133 | - | |
Vra1g0103 | 1536 | TIGRFAM | pol2: DNA polymerase (pol2) | 50 | 1287 | - | - | |
Vra1g0103 | 1536 | Gene3D | DNA Polymerase alpha, zinc finger | 1328 | 1521 | IPR038256 | - | |
Vra1g0103 | 1536 | PANTHER | DNA POLYMERASE ALPHA CATALYTIC SUBUNIT | 16 | 1535 | - | - | |
Vra1g0103 | 1536 | Pfam | DNA polymerase alpha subunit p180 N terminal | 25 | 91 | IPR024647 | - | |
Vra1g0103 | 1536 | Pfam | DNA polymerase family B | 819 | 1289 | IPR006134 | GO:0000166|GO:0003677 | |
Vra1g0103 | 1536 | SUPERFAMILY | DNA/RNA polymerases | 892 | 1305 | IPR043502 | - | |
Vra1g0103 | 1536 | Gene3D | - | 387 | 513 | - | - | |
Vra1g0103 | 1536 | Pfam | DNA Polymerase alpha zinc finger | 1328 | 1532 | IPR015088 | GO:0003887|GO:0006260 | |
Vra1g0103 | 1536 | SMART | polmehr3 | 560 | 1068 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Vra1g0103 | 1536 | MobiDBLite | consensus disorder prediction | 876 | 901 | - | - | |
Vra1g0103 | 1536 | PRINTS | DNA-directed DNA-polymerase family B signature | 918 | 931 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Vra1g0103 | 1536 | PRINTS | DNA-directed DNA-polymerase family B signature | 1001 | 1013 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Vra1g0103 | 1536 | PRINTS | DNA-directed DNA-polymerase family B signature | 1054 | 1062 | IPR006172 | GO:0000166|GO:0003676|GO:0003887 | |
Vra1g0103 | 1536 | Gene3D | - | 1133 | 1319 | IPR042087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra1g0103 | Vra-Chr1 | 1223671 | 1235617 | Dispersed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra1g0103 | 2 | 1534 | Core DNA Replication Machinery Family | AT5G67100 | 58.029 | 0.0 | 1735 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra1g0103 | K02320 | - | gmx:100798779 | 2415.19 |