Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0103 ATGGCGGATGAGGAGCCAGTAAGAGGAAGGCGAAGGCCCAGGGGCCCGGAGTCCACCCCTCGCAGCGAAGCGTTGGAGCGTCTCAAAGCCCGCCGCGGTGATCGTCGATCCGATGGCACTGGCCTCCAAATCAGGTTAGAAAACCCTATCTACGACACTGTCCCTGAGGATGAGTACAATGCCCTCGTTGCCAAACGCCGTGAACAGGCGCGCTCCTTTATAGTCGACGATGAAGGAATCGGATACGGTGATGAGGGCGAGGAAGAGGACTGGTCTCAGGCCGGGTTCACTCTCTCCTCTGATGAATCCGAAGGTGAATTGGAGAGGCCGAAGCGGAAGAAGGTCAGGAAGAAGGATCACCAGCCGGAACGACCCTCTTCATCGCTCTCCGCGGCTGCGGCCATGATGGGAGGGCAGAAGTTGTTGTCCATGTTCACTAGCTCCGTTTTCAAGAGCAGAGACGACAAAGTCTGTGAGAGCATCGTCGAAGATGTTATTGCAGAGTTCGCTGCGGACGAGACTGATAGACTGAAGCGTAGAAGGGTGCAAGGGAATTCCTCTTCCACTTCTGATGCAAACAATGTTTTGCATGTTAATATGTTTAGGGATAAACCTTCTGTTGGTATGATGCAAAATTCTTCTTCATTGCCGGAACATGGTAACCCTGAGTCTGTTAAGGTATTTGCTGAGAGTGATGGTTTTTACTCGGGGTTTGAGCCAAAGAGTACAGTGGTTAGTGAAGTCCAAGATTTCGGGCGTGGTAGTTCTGAGAATGGACAGACACCGACGGTGGTAGCTGAAGATTCTCAAGTTAATGAATATATGGTTGAGGCGAAAGAGGTGAATAGTTTTCAAATTGAAGTGAAAGCGGATGCAAAGAAGGAGGTGTTCACTTTGAAGGCCAAGGTTAAAGAAGCTGACGACACTGCATTGTCTGCTACTGCTGGTTGGAAGGAACCAATATCCTTCGAATCAGCACCGCGTATATCTTCCTTCCAACACTCAGAGTTTGATCTGGAGGAAGATGGATCACTGCCTTTCTACATATTAGATGCGTATGAGGAGTTTCATGGGGAAAACAGGGGCACAATTTATCTCTTTGGGAAGGTTAAGACTGGGGATTTGTATCAGAGTTGTTGTGTTATTGTCAAGAGCATGCAGAGGTGTGTCTATGCAGTTCCTAGCCGACCCTTGCTTCGCACTGAAGAGATGATGAGTCTCGAGAGAGATGTCCAGGAGTCTCGAATTTCTTCAGAGGATTTCTTTAAAAAGTTGCGAGATGCAGTAGCTGATGTTAAGAAAGAGATAGCACAACATCTGGTGAATTTGGATGTTTCGAACTTTAGCATGGCACCTGTTAAGAGGAAATATGCATTTGATCGATTTGAAGTTCCTACTGGGGAAAATTATGTGGTGAAAATAAATTATTCATTCAAGGGTCCTGTACTTCCAGCAGATCTCAAAGGAGAAAGTTTCTGTGCTCTCTTAGGAACTAGTTGCAGTGCCCTTGAGCTTTTTCTGATTAAAAGGAAGATAAAGGGGCCTTCATGGCTACAGGTTTCAAAGTTTGCTACAAGCTCATCTTCCCCAAGGGTTAGCTGGTGCAAATTTGAAGTAACTGTTGACTCTCCTAAGAACATAAATACATCAGCTACTTCAAAAATCATTTCTAATATCCCTCCAGTGGTTGTTGCAGCAATAAACTTGAAAACCACCATAAATGAAAAGCAGAACATAAATGAGATTGTATCAGCATCCGTTGTCTGTTGTAACATGGTTAAGATTGATGCCCCTATGATGGCTTCAGAGTGGACGAAACCCGGAAGGCTGACCCATTTTACTGTTGTTCGTCGACTTGATGGGGGCATATTTCCAATGGGATTCGAGAAGGAGGTTACGGACAGAAACTTAAAAGCTGGTTCAAAGATTCTGTGTGCTGAAACCAGTGAAAGAGCTTTATTGAACCACTTGATGTTAGAATTGCACAAGTTGGATTGCGATGTTCTGGTTGGACATAATATATCTGGATTTGACCTGGATGTTCTTCTCCACAGATTCGAGGCCTGCAAAGTGGCAAGCAGCATGTGGTCTAAACTAGGCCGCCTCAACCGATCGACTATGCCTAAACTTGGAAGAAGAAATAAGGTTTTTGGTTCTGGAGCTGATCCTGGTATCATGTCATGCATTGCTGGCAGGCTTCTTTGTGATACATACTTGTGTTCCCGTGACCTATTAAAGGAGGTTAGTTACTCTTTAAGTCACCTTGCAAAATCACACCTGAACAAGTTTCGGAAGGAAGTTGCTCCACATGAAGTTCCAAAAATGTTCCAGTCAGCAGAATCGCTAATGGAGCTTATTGAATACGGTGAAACAGATGCATGGTTGTCTATGGAACTAGTTTTTTATTTAAATATTCTTCCACTCACCCGTCAGCTGACTAATATAAGTGGTAATCTGTGGGGGAAAACTCTTCAGGGTGCTCGAGCACAGAGGGTTGAATATATTTTTCTGCATACTTTCCATGCAGCGAAATATATGGTGCCAGACAAGTTCTCAAACTATTCTAGAGAAACGAAATTGACGAAACGTAGACTAACCCACGATGCTGAAGATAGCAACTACGATGTAGATGTTGACGATGTAAACTATGACAATGATGCTTCTGAAGCTGATAATAAGAAAAGCAAAAAGGGTCCTTCTTATGCTGGGGGACTGGTTTTGGAGCCAAAGAAGGGTCTATATGACAAATATATACTGCTGCTGGATTTCAACAGTCTTTATCCTTCTATTATTCAGGAATACAATATTTGCTTTACAACTGTTGAAAGATCTTTGGATGGATCTTTTCCACGTCTACCATCTAGTAAAACAACTGGAGTCTTGCCAGAGGTGCTGAAAAATTTGGTAGATAGGAGGAAGAGGGTAAAGTCGTTGATTAAGAATGAAAAAGAGAAGAATGAAAAAGCTGATCCTATAACGGTTCAGCAACTGGATATTCGGCAGCAAGCACTTAAGCTTACTGCTAACAGTATGTATGGGTGCCTGGGATTTTCCAATTCAAGATTTTATGCTAAGCCGTTGGCTGAGCTTATTACTTTACAAGGAAGGGAGATACTGCAGAGTACTGTTGATTTAATTCAGAATGCCTTGAATTTAGAGGTGATCTATGGCGACACCGATTCAATAATGATTTACAGTGGGCTGGATGATATTGAGGAAGCTAATAAAATTGCTGTAAAAGTTATTCAAGAGGTCAATAAGAAATATAAATGTTTGGAAATTGATCTTGATGGTTTATATAAAAGAATGCTGCTTCTCAAGAAAAAGAAGTATGCAGCTGTAAAGTTGCTGTTTAAAGATGGCACCCCATATGAGGAGGTGATTGAACGAAAAGGTCTTGACATTGTTCGTCGTGACTGGAGCTTATTAGCTAAAGAATTAGGAGATTATTGCTTGACTCAAATTTTGTCTGGAGGGTCATGTGAAGATGTAGTGGAGTCAATCCACAACTCGCTCATAAAGGTACAAGAAGAAATGAGGAACGGACAAGTACCATTAGAGAAATATGTCATTATGAAGACATTGAATAAACCCCCTGAAGCTTATCCCGATGCCAAGAACCAGCCACATGTTCTTGTGGCACAAAGACTGAAGCAACAAGGTTACTCTTCTGGCTGTTCTGTTGGAGATACAATCCCGTATATAATTTGTTATGAACAGGGTGGCAGTTCAGGCAGTGCTGGTGGCATTGCTCAACGTGCTAGACATCCTGAAGAACTTAAACGGGAACAAGGGACATGGATGATTGACATTGATTACTATTTATCACTACAGATCCATCCCGTAGTATCACGCCTTTGTGCATCAATTCAGGGAACAAGCCCAGAAAGACTGGCTGATTGCTTAGGGCTTGACTCCTCAAAGTTTCATCATAAATCAAGTGAAGCTTTTACTGATGATTCTAGCAATTTACTCTTGTCTGCAGCTAATGATGAGGAGAGGTATCGGGGATGTGAGCCATTGGTCTTGTCATGCCCCAGCTGCTCTGGTACATTTGACTGCCCACCCGTCTCTAAATATATTTGCTGCTTGTTGGGAAGTGGAATGACAACCAGCGTATCCACCAAGGAATCTGACTTCAATTTCTGGCGTAAGCTGTGTTGTCCTAAATGCCCCGAAGATATCAAAATTTCTCCAGGGATGATAGCGAATCAGGTCAAATGGCAAGCAAAGATGTTTATTTTGATGTTCTATGAAGGTTTACGAACGTGTGATGATGAAACGTGTAAGCATACAACACGACTTATCAGCCATCGGTTTGTTGGTGGTTTCGAGAGAGGAACTGTTTGTCCAAATTATCCTCGCTGCAATGGTCGTCTGCTTAGAAAGTACACTCAAGCAGACTTGTACAAGCAGCTCTCGTATTTTTGCCACGTGTTTGACACTGTTTCTTGTATAGAAAAGATGGAGGCCAAATCTAAAAAAACTATAGCGAAAGAGGTGATAAAAATTAGGCGGATGATTCATCCAGCAGCTTCAACAGCGCAGAAGATCAGGGACCAATGTCCCTTTGGTTGGGTGAGACTGGAGGATCTGGTCGTATCAGTTTAA 4611 0.4316 MADEEPVRGRRRPRGPESTPRSEALERLKARRGDRRSDGTGLQIRLENPIYDTVPEDEYNALVAKRREQARSFIVDDEGIGYGDEGEEEDWSQAGFTLSSDESEGELERPKRKKVRKKDHQPERPSSSLSAAAAMMGGQKLLSMFTSSVFKSRDDKVCESIVEDVIAEFAADETDRLKRRRVQGNSSSTSDANNVLHVNMFRDKPSVGMMQNSSSLPEHGNPESVKVFAESDGFYSGFEPKSTVVSEVQDFGRGSSENGQTPTVVAEDSQVNEYMVEAKEVNSFQIEVKADAKKEVFTLKAKVKEADDTALSATAGWKEPISFESAPRISSFQHSEFDLEEDGSLPFYILDAYEEFHGENRGTIYLFGKVKTGDLYQSCCVIVKSMQRCVYAVPSRPLLRTEEMMSLERDVQESRISSEDFFKKLRDAVADVKKEIAQHLVNLDVSNFSMAPVKRKYAFDRFEVPTGENYVVKINYSFKGPVLPADLKGESFCALLGTSCSALELFLIKRKIKGPSWLQVSKFATSSSSPRVSWCKFEVTVDSPKNINTSATSKIISNIPPVVVAAINLKTTINEKQNINEIVSASVVCCNMVKIDAPMMASEWTKPGRLTHFTVVRRLDGGIFPMGFEKEVTDRNLKAGSKILCAETSERALLNHLMLELHKLDCDVLVGHNISGFDLDVLLHRFEACKVASSMWSKLGRLNRSTMPKLGRRNKVFGSGADPGIMSCIAGRLLCDTYLCSRDLLKEVSYSLSHLAKSHLNKFRKEVAPHEVPKMFQSAESLMELIEYGETDAWLSMELVFYLNILPLTRQLTNISGNLWGKTLQGARAQRVEYIFLHTFHAAKYMVPDKFSNYSRETKLTKRRLTHDAEDSNYDVDVDDVNYDNDASEADNKKSKKGPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSLDGSFPRLPSSKTTGVLPEVLKNLVDRRKRVKSLIKNEKEKNEKADPITVQQLDIRQQALKLTANSMYGCLGFSNSRFYAKPLAELITLQGREILQSTVDLIQNALNLEVIYGDTDSIMIYSGLDDIEEANKIAVKVIQEVNKKYKCLEIDLDGLYKRMLLLKKKKYAAVKLLFKDGTPYEEVIERKGLDIVRRDWSLLAKELGDYCLTQILSGGSCEDVVESIHNSLIKVQEEMRNGQVPLEKYVIMKTLNKPPEAYPDAKNQPHVLVAQRLKQQGYSSGCSVGDTIPYIICYEQGGSSGSAGGIAQRARHPEELKREQGTWMIDIDYYLSLQIHPVVSRLCASIQGTSPERLADCLGLDSSKFHHKSSEAFTDDSSNLLLSAANDEERYRGCEPLVLSCPSCSGTFDCPPVSKYICCLLGSGMTTSVSTKESDFNFWRKLCCPKCPEDIKISPGMIANQVKWQAKMFILMFYEGLRTCDDETCKHTTRLISHRFVGGFERGTVCPNYPRCNGRLLRKYTQADLYKQLSYFCHVFDTVSCIEKMEAKSKKTIAKEVIKIRRMIHPAASTAQKIRDQCPFGWVRLEDLVVSV* 1537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0103 1536 SUPERFAMILY Ribonuclease H-like 447 841 IPR012337 -
Vra1g0103 1536 Gene3D - 347 546 - -
Vra1g0103 1536 MobiDBLite consensus disorder prediction 1 42 - -
Vra1g0103 1536 ProSitePatterns DNA polymerase family B signature. 1056 1064 IPR017964 GO:0000166|GO:0003676
Vra1g0103 1536 Gene3D Palm domain of DNA polymerase 887 1117 IPR023211 -
Vra1g0103 1536 Coils Coil 1068 1102 - -
Vra1g0103 1536 Gene3D - 560 876 IPR036397 GO:0003676
Vra1g0103 1536 CDD DNA_polB_alpha_exo 560 811 - -
Vra1g0103 1536 MobiDBLite consensus disorder prediction 77 131 - -
Vra1g0103 1536 Gene3D Helix hairpin bin 963 1014 - -
Vra1g0103 1536 MobiDBLite consensus disorder prediction 1 41 - -
Vra1g0103 1536 CDD POLBc_alpha 894 1305 IPR045846 GO:0003887|GO:1902975
Vra1g0103 1536 Coils Coil 965 985 - -
Vra1g0103 1536 Pfam DNA polymerase family B, exonuclease domain 377 753 IPR006133 -
Vra1g0103 1536 TIGRFAM pol2: DNA polymerase (pol2) 50 1287 - -
Vra1g0103 1536 Gene3D DNA Polymerase alpha, zinc finger 1328 1521 IPR038256 -
Vra1g0103 1536 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 16 1535 - -
Vra1g0103 1536 Pfam DNA polymerase alpha subunit p180 N terminal 25 91 IPR024647 -
Vra1g0103 1536 Pfam DNA polymerase family B 819 1289 IPR006134 GO:0000166|GO:0003677
Vra1g0103 1536 SUPERFAMILY DNA/RNA polymerases 892 1305 IPR043502 -
Vra1g0103 1536 Gene3D - 387 513 - -
Vra1g0103 1536 Pfam DNA Polymerase alpha zinc finger 1328 1532 IPR015088 GO:0003887|GO:0006260
Vra1g0103 1536 SMART polmehr3 560 1068 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vra1g0103 1536 MobiDBLite consensus disorder prediction 876 901 - -
Vra1g0103 1536 PRINTS DNA-directed DNA-polymerase family B signature 918 931 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vra1g0103 1536 PRINTS DNA-directed DNA-polymerase family B signature 1001 1013 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vra1g0103 1536 PRINTS DNA-directed DNA-polymerase family B signature 1054 1062 IPR006172 GO:0000166|GO:0003676|GO:0003887
Vra1g0103 1536 Gene3D - 1133 1319 IPR042087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0103 Vra-Chr1 1223671 1235617 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0103 2 1534 Core DNA Replication Machinery Family AT5G67100 58.029 0.0 1735
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0103 K02320 - gmx:100798779 2415.19