Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0101 ATGGCAGCAGAACTTGTCGGTGGTGCTCTTCTTTCCGCTTTTCTTCAGGTTGCATTCGACAGGTTGGCTTCTCCTCAATTCGTAGACTTCTTCCGTGGAAGAAAACTTGATGAGAAGTTGCTGGGCAACTTGAATATCATGCTGCATTCTATCAATGCTCTCGCTCATGATGCAGAACAGAAGCAGTTCACAGATCCACACGTTAAAGCATGGCTTTTTTCTGTCAAAGAGGCTGTTTTTGACGCAGAGGATCTCTTGGCTGAAATAGATTATGAACTCACTAGATGCCAAGTGGAAGCTGAATCCGAACCTAAAACCTTTACTCACAAGGTATCAAATTTCTTCAACTCTAGTTTCAATTCCTTTAACAAGAAAATTGAATCAGAAATGAAAGAACTCCTAGAAAAACTAGAATATCTTNCAAAGCAAAAGGGTGCTCTTGGTTTGAAAGAGGGTACTTATTCTGGTGACAGGTCAGGTGATAAAATGTCACAGAAATTGCCATCATCTTCTTTGATGGTTGAAAGTGTTATTTATGGTAGAGATGCCGACAAAGAAATGATCTTTAATTGGCTGACATCTGAGACCGACAATCAAAACCTATCCATACTTTCCATAGTGGGCATGGGTGGATTGGGTAAGACCACACTCGCCCAGCATGTATACAATGACCAAAAAATCGAGACTAAATTTGATATAAGAGCTTGGGTGTGTGTTTCCGATCATTTTGATATTTTGACAGTGACAAAAACAATTCTTGAGGCAATTACAAAATCTAAAGATGACAGCGGAAACCTAGAAATGGTTCATGGAAGATTGAAAGAAAAAGTATCGGGAAAGAAATTTCTTCTGGTTTTGGATGATATTTGGAGCGAAAGGCGAGAAGAATGGGAAGCTGTGCAAACTCCTCTAAGCTATGGGGCTCCAGGAAGTAGAATTCTTGTCACAACACGTGTTGAGAAAGTTGCTTCTAACATGAGATCTAAAGTGCATCGCCTAAAGCAGTTAGAAGAAGATGAATGCTGGAAAGTTTTTGAAGAGCAAGCTCTAAAAGGTGATGATATTGAATTGAATGATGATAAAAAGGAGATTGGTAGAAGGATAGTTGAGAAGTGCAAAGGATTACCTCTTGCTTTGAAAACAATTGGAAGTCTTCTCTGCACAAAGTCATCCCTTTCAGATTGGAAAAACGTATTGAAAAGCGACATATGGGACTTGCCGAAAGAAGTCGAAATTATTCCTGCTCTACTATTGAGTTATCAGCACCTTCCTTCTAATCTCAAGAGGTGCTTTGCTTATTGTGCATTATTTCCGAAAAATTATGAGTTTGACAAAGACGAATTAATTTTGTTGTGGATGGCTGAAGGTTTTCTCCATTACTCTCCGCAGAACAACAATATAGAAGAAATTGGTGAACAATATTTTGATGATCTGCTAACCAGGTCTTTCTTTCTTCGGTCAAACATCAAAATGCATTTCTCCATGCATGATCTTCTGAATGATTTGGCAAAATATGTTTCTGCAGAATTCTGTTTCAGGTTGAATTTTGATAAAGGAGATTGTGTACCCAAAACAACCCGTCATTTTTCATATGCTCTCAGCGACTTAAATTCTTGTGATGTAAAATATTTTGATGGTTTAGGAAGTTTAAGGGATGCTAAAAGACTGCGATCATTTCTTCCAATTGTAAGTAATTATGGTGACGGTCTTTTTTCTCGATTCGAGATTTTGATACGTGAATTCTTCAAGTTGAAGTTTTTACGCGTCTTATCTTTGAATGGATATCATCACTTCAAAGAGGTCCCTGATTCTGTTGGTGATCTTAAACATCTCCATTCATTGGACCTTTCTTATACTTGGATACAAAGACTACCAGACTCAGTAGGTTTGCTCTATAATTTGCTGATATTGAAGTTGAATGGTTGTTTCTATTTGAAGGAATTGCCTTCAAGTTTGCGTAATCTCACCAAATTACGTTGCTTGGAGTTTGAAGATACAGAAGTGACAAAGATGCCAATGCATTTTGAACAGGTGAAGAATCTTCATGTACTGAATATGTTTTGTGTCAGTAGAAATAGTGAGTTCAGTATTAAGCAGCTAGGTGGAATCAATCTTCATAAAAGGCTATCAATTAATGAGCTGCAAAATATTGACAATCCTTTGGATGCATTAGAAGCAAATTTGAAAAAAAAACAGCTTGTGCGACTAAAGTTAATATGGAATTTGAATCACATCCCCGATGATCCAATGAAAGAGAAGAAAGTGCTTGAGAATCTACAACCTTCTAATCAGTTGGAACATCTTTCAATCAGGAGCTATTGTGGTACACAATTCCCAAGTTGGGTATTTGATAATTCGTTATCAAATTTGGTATCCTTAGAGTTAGAGGATTGTAAATATTGCTTATATTTACCTCCCCTTGGATTATTGTCATCTCTGAAGTCCCTGGAGATTAAAGGACTTGATGGAATAGTGAGCATTGGTGCTGAATTTTATGGGAGCAACTCTTCTTCATTCAAGTCCTTGGAAATATTGAGATTCTTCTACATGAAGGAATGGGAAGAATGGGAATGCAAAACTACTTCTTTTCCACGTCTTCGACGTCTTTTTGTGGTTCAATGTCCCAAGTTGAAAGGTTTGTCAGAGCAACTTCTTCATTTAGAACAACTATATATTGAGTCATGTCCTAACCTCATCATTAGCGAACACATCAAAGACACATTAGCACTTGAACTCTTGACAATTATTCGTGGTTGTAACTCTCTTACAATCTTTCAACTAAATTTCTTTCCAATGCTCCGTTTTCTTCATCTCCAAGGATGCCAAAACCTACAAAGAATTTCACAAGAGCACCCTCATAATCATCTCGAGACAATGTCAATTTGTGCATGTCCTCAATTTGAATCATTTCCCGGTGAAGGGTTATCTGAAGCATTTCCATCTCTTACTGAACTGCGGATAATTAATTGTCCAAAAGTGGAGAAGTTCCCAGATGTAGGTTTGCCATCAAACGTAAAACACTTGTCTCTTTCAAGTTTAAAACTTATCACCTCCCTGCGAGAGATTTTGAATGTCAATACATGTCTTGAAATGTTATATATTGACTCTCTTGATGTGGAGTGTTTTCCCGATGAAGTTTTGCTGCCACCTTCTCTTACTTCTTTAAGAATCAGTAATTGCCGAAATCTCAAAAAGCTAGACTACAAGCTTCTCTATAACCTCTCATCTCTCACACTTTCAGAATGTCGTAACCTCCAATTCTTACCGGAGGAGGGTCTGCCCAAATCCATCTCTTTTCTTGATATTTGGGACTGTCCATTGCTCGAACAGCGTTGTCAGAAGCCAGAAGGCAAAGATTGGAGAAAGATTGCTCACATTGAAAATCTGGGTGTTGGGTCATAA 3402 0.3783 MAAELVGGALLSAFLQVAFDRLASPQFVDFFRGRKLDEKLLGNLNIMLHSINALAHDAEQKQFTDPHVKAWLFSVKEAVFDAEDLLAEIDYELTRCQVEAESEPKTFTHKVSNFFNSSFNSFNKKIESEMKELLEKLEYLXKQKGALGLKEGTYSGDRSGDKMSQKLPSSSLMVESVIYGRDADKEMIFNWLTSETDNQNLSILSIVGMGGLGKTTLAQHVYNDQKIETKFDIRAWVCVSDHFDILTVTKTILEAITKSKDDSGNLEMVHGRLKEKVSGKKFLLVLDDIWSERREEWEAVQTPLSYGAPGSRILVTTRVEKVASNMRSKVHRLKQLEEDECWKVFEEQALKGDDIELNDDKKEIGRRIVEKCKGLPLALKTIGSLLCTKSSLSDWKNVLKSDIWDLPKEVEIIPALLLSYQHLPSNLKRCFAYCALFPKNYEFDKDELILLWMAEGFLHYSPQNNNIEEIGEQYFDDLLTRSFFLRSNIKMHFSMHDLLNDLAKYVSAEFCFRLNFDKGDCVPKTTRHFSYALSDLNSCDVKYFDGLGSLRDAKRLRSFLPIVSNYGDGLFSRFEILIREFFKLKFLRVLSLNGYHHFKEVPDSVGDLKHLHSLDLSYTWIQRLPDSVGLLYNLLILKLNGCFYLKELPSSLRNLTKLRCLEFEDTEVTKMPMHFEQVKNLHVLNMFCVSRNSEFSIKQLGGINLHKRLSINELQNIDNPLDALEANLKKKQLVRLKLIWNLNHIPDDPMKEKKVLENLQPSNQLEHLSIRSYCGTQFPSWVFDNSLSNLVSLELEDCKYCLYLPPLGLLSSLKSLEIKGLDGIVSIGAEFYGSNSSSFKSLEILRFFYMKEWEEWECKTTSFPRLRRLFVVQCPKLKGLSEQLLHLEQLYIESCPNLIISEHIKDTLALELLTIIRGCNSLTIFQLNFFPMLRFLHLQGCQNLQRISQEHPHNHLETMSICACPQFESFPGEGLSEAFPSLTELRIINCPKVEKFPDVGLPSNVKHLSLSSLKLITSLREILNVNTCLEMLYIDSLDVECFPDEVLLPPSLTSLRISNCRNLKKLDYKLLYNLSSLTLSECRNLQFLPEEGLPKSISFLDIWDCPLLEQRCQKPEGKDWRKIAHIENLGVGS* 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0101 1133 Gene3D Ribonuclease Inhibitor 916 1128 IPR032675 -
Vra1g0101 1133 PANTHER DISEASE RESISTANCE PROTEIN RP 14 970 IPR044974 GO:0006952
Vra1g0101 1133 Gene3D Ribonuclease Inhibitor 708 908 IPR032675 -
Vra1g0101 1133 PRINTS Disease resistance protein signature 203 218 - -
Vra1g0101 1133 PRINTS Disease resistance protein signature 276 290 - -
Vra1g0101 1133 PRINTS Disease resistance protein signature 372 386 - -
Vra1g0101 1133 PRINTS Disease resistance protein signature 785 801 - -
Vra1g0101 1133 Gene3D - 335 418 IPR042197 -
Vra1g0101 1133 Coils Coil 319 339 - -
Vra1g0101 1133 Pfam NB-ARC domain 182 400 IPR002182 GO:0043531
Vra1g0101 1133 Gene3D Ribonuclease Inhibitor 562 700 IPR032675 -
Vra1g0101 1133 SUPERFAMILY L domain-like 495 910 - -
Vra1g0101 1133 Pfam Rx N-terminal domain 11 103 IPR041118 -
Vra1g0101 1133 Gene3D - 34 137 - -
Vra1g0101 1133 PANTHER OS05G0414200 PROTEIN 14 970 - -
Vra1g0101 1133 Gene3D - 419 505 IPR036388 -
Vra1g0101 1133 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 163 434 IPR027417 -
Vra1g0101 1133 Coils Coil 123 140 - -
Vra1g0101 1133 SUPERFAMILY L domain-like 862 1124 - -
Vra1g0101 1133 Gene3D - 160 334 IPR027417 -
Vra1g0101 1133 Coils Coil 142 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0101 Vra-Chr1 1207372 1211213 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0101 200 827 WRKY Transcription Factor Family AT5G45050 23.894 4.71e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0101 - - vra:106774688 1783.07