Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0097 ATGGAAACTGCTGTCAACATAGGGTATGCTTGCAGTTTACTTAGGAAAGACATGAAACAAATAGTGATCACTCTTGATTCCTCAGATATCCTATACTTGGAAAAACAAGGGGACAAGCAGGCTTTAGCAAAGGCTTCTCTTGAAAGCATTAAGAAACAAATTGGAGAAGGAATCTCACAAATTAACTCTGCAAAAGAGAGTTCTAATGCAAATAAAGGAAGTTCTTCTGGGTTTGGCCTTAAAATCGATGGAAAGTCCTTGGATTATTCTCTTAACAAGAATTTGGAAAGGTCCTTCTTTGAGCTTGCCATTAATTGTGCTTCTGTCATCTGTTGCCGATCTTCATCCAAACAGAAGGCTCGGGTTACAAGGTTGGTAAAATTGGGAACGGGAAAGACAACCTTATCTATTGGAGATGGGGCAAATGATGTTGGCATGCTTCAGGAGGCTGATATTGGAGTTGGTATTAGTGGTGCTGAAGGGATGCAGGCTGTAATGGCAAGTGATTTTGCAATAGCTCAATTCCGGTTTCTAGAGCGACTTTTGTTGGTACATGGTCATTGGTGTTATCGGCGTATATCAATGATGATATGCTATTTTTTCTATAAAACCATTGCATTTGGATTTACCCTTTTTTGGTTTGAGGCGTATGCTTCTTTCTCTGGTCAAGCTGCTTACAATGATTGGTACATGTCATTTTACAATGTCTTCTTCACTTCACTTCCAGTGATCGCTCTAGGTGTTTTTGATCAAGATGTTTCTGCCAAACTTTGCCTAAAGTATCCCTTTCTATATCTAGAGGGAATAGAAGACACCCTGTTCAGCTGGCCCCGGATTCTAGGGTGGATGTTGAATGGAGTCCTTAGTTCTTTAGTAATATTCTTCTTAACCACTAATTCTGTGTTGAATCAAGCCTTCAGAAGAGATGGTAAGGTGGTTGATTTTGAAATACTTGGGGTCACAATGTATACATGTGTGGTGTGGACTGTGAATTGCCAAATGGCATTATCCATCAATTACTTTACTTGGATACAACATTTTTTTATATGGGGCAGCATAGCCTTCTGGTATGTATTTGTGTTGGTCTATGGTTACTTATCTCCAGGAATATCGACAACATCTTACAAGGTTTTTGTGGAAGCATGTGCTCCCAGTGGTCTCTATTGGCTAGTAACCCTTTTGGTTGTTGTGTGTGTGCTGCTACCNTATTTCTCCTATAGGTCTTTCCAAAGTCGGTTTCTTCCAATGTACCATGATATTATACAGAGAAAACAAGTAGAAGGGATTGAAATTGGCTTATCTGATGATGATTTACCTAAACAGGTCCAAGGAAAACTAATACACCTCAGAGAGAGATTGAAGCAAAGGGAGCTGTGA 1377 0.3965 METAVNIGYACSLLRKDMKQIVITLDSSDILYLEKQGDKQALAKASLESIKKQIGEGISQINSAKESSNANKGSSSGFGLKIDGKSLDYSLNKNLERSFFELAINCASVICCRSSSKQKARVTRLVKLGTGKTTLSIGDGANDVGMLQEADIGVGISGAEGMQAVMASDFAIAQFRFLERLLLVHGHWCYRRISMMICYFFYKTIAFGFTLFWFEAYASFSGQAAYNDWYMSFYNVFFTSLPVIALGVFDQDVSAKLCLKYPFLYLEGIEDTLFSWPRILGWMLNGVLSSLVIFFLTTNSVLNQAFRRDGKVVDFEILGVTMYTCVVWTVNCQMALSINYFTWIQHFFIWGSIAFWYVFVLVYGYLSPGISTTSYKVFVEACAPSGLYWLVTLLVVVCVLLPYFSYRSFQSRFLPMYHDIIQRKQVEGIEIGLSDDDLPKQVQGKLIHLRERLKQREL* 459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0097 458 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 428 - -
Vra1g0097 458 Pfam Phospholipid-translocating P-type ATPase C-terminal 165 415 IPR032630 -
Vra1g0097 458 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 9-RELATED 1 428 - -
Vra1g0097 458 SUPERFAMILY Calcium ATPase, transmembrane domain M 186 414 IPR023298 -
Vra1g0097 458 SUPERFAMILY HAD-like 94 192 IPR036412 -
Vra1g0097 458 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 1 423 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Vra1g0097 458 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 105 220 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra1g0097 458 Gene3D - 1 177 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0097 Vra-Chr1 1182348 1186802 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0097 2 457 Primary Pumps ATPases AT3G27870 71.678 0.0 694
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0097 K01530 - gmx:100817020 865.529