Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0090 ATGCCTGGAGGGAGCAGCAAAAGGAGGATACATTTTAGCAAACTGTACAGTTTTTCTTGTTTGAAATCTCCTTTCAGAGATGGTCATTCCCAAATTGGGCAGAAGGGGTACTCCAGGGTTGTGTACTGCAATGATCCAGATAACCCTGAAGCAGTTCAGTTGAGTTATGGAGGCAATTATGTTTCAACAACCAAGTATACAGCTTTTAATTTTATCCCCAAGTCTTTGTTTGAGCAGTTCAGGAGGGTTGCAAATATCTACTTTCTCATTGTTGCGTGTGTTTCATTTAGTCCATTGGCACCTTTTACTGCTCTGAGTATTGTTGCTCCGTTGCTGGTTGTGATCGGAGCTACTATGGCCAAGGAAGCTGTGGAAGATTGGAGGAGGAGAAAACAGGATGTAGAGGCAAACAACAGAAAGGTTCAGGTATATGGTAGAAATTATACGTTTACGGAGACTAGATGGAAGAAACTCCGTGTTGGGGATATCATTAAAGTTTACAAGGATGAATACTTTCCAGCAGATCTTCTTTTGCTTTCATCAAGCTATGGTGACGGGGTTTGTTATGTCGAGACTATGAATCTTGACGGAGAAACTAATCTAAAATTAAAGCATGCTTTGGAGGTGACAGTTCATCTTCATGATGAAAAATCTCTACAAAAGTTTAGGGCTATGGTTAAATGTGAGGATCCTAATGAAAATCTGTACTCATTTATTGGAACTTTACAACATGATGGTAAAGAATATCCTCTTTCCTTGCAGCAGATCCTGTTAAGAGATTCTAAGTTGAAAAACACTGATTTTATCTATGGCATTGTTATCTTTACTGGTCATGATACGAAAGTTATGCAGAATTCCACTGATCCTCCGTCCAAGAGAAGCAAAATTGAGAGGAAAATGGATAAGATAATCTACATCCTCTTCAGTACCTTGGTTTTGATATCCTTTATTGGTTCTGTCTTTTTTGGTATTGAAACCAAAAAGGATATCAGTGGTGGAAGGTATAGAAGATGGTATCTTCGTCCAGACAATGCAACAGTGTTCTATGATCCCAGAAGGGCAACACTTGCTGCTGTTCTTCATTTTTTGACTGCCATTATGTTGTATGGATATCTAATTCCGATATCACTTTACGTGTCCATAGAAATTGTGAAAGTTCTACAGAGCATTTTCATCAACCAAGACCAAGAAATGTATCATGAAGAATCAGACAGGCCTGCTCATGCACGCACGTCTAATTTGAATGAAGAACTTGGCCAGGTTGATACAATATTGAGTGACAAAACTGGTACTTTGACATGTAACTCAATGGAGTTTGTCAAATGTTCAATAGGGGGCATTGCATATGGTCGCGGTATGACAGAAGTAGAGAAGGCACTTGCTAGGAGAGGTAAAGGTGGGGAATCTGATGATGTTGATAGTGGATCATCTGATTTCTTGGGCCAGAATAATGAGTCAGTTGATTCTCTTCATCCGGTTAAGGGCTTTAATTTTAGCGATGAGCGCCTAGTGAATGGGCGATGGGTTAATGAACCATATCCAGACTTCATACAGAAATTCTTCCGAGTTTTAGCTATTTGTCACACAGCTATTCCAGATGAAGATAAAGAGTCTGGAGAAATTTCCTATGAAGCCGAGTCACCAGATGAAGCAGCTTTTGTCATTGCAGCAAGGGAGCTCGGTTTTGAGTTTTTTGCAAGGACACAAACAAGCATATCATTGCACGAATTGAACTATAAAAGTGGAAAAAAGGTTGACAGTAGAGTATACCAGCTTCTGCATGTCTTGGAGTTCAGCAGTTCCCGCAAAAGAATGTCAGTGATAGTGAGGAATGAGGAAAATCAAATATTGCTTCTATGCAAGGGTGCAGACAGTGTAATGTTTGAAAGGCTCTCACAACATGGAAGACAATTTGAGGTTGAAACGAGGGATCATATCAAAAGGTATGCCGAGGCTGGTTTAAGAACCCTTGTAGTCACATACCGTGAACTTGATGAAGAAGAATATAAGTTATGGGATAAGGAGTTTTCAAAGGTCAAAACTTCTGTAACAGAAGACCGAGATGCACTTGTGGATGCCGCTGCTGATAGGATGGAAAGAGATTTGATGCTTCTTGGTGCTACTGCAGTTGAGGATAGACTGCAAAAGGGGGTTCCCGAGTGTATTGAAAAGCTTGCACGGGCAAAAATCAAGTTATGGGTATTGACTGGAGACAAGATGGAAACTGCTGTCAACATAGGGTACGCTTGCAGTTTACTTAGAAAAGACATGAAACAGATAGTGATCACTCTTGATTCCTCAGATATCCTATACTTGGAAAAACAAGGGGACAAGCAGGCTCTAGCAAAGGCTTCTCTTGAAAGCATTAAGAAGCAAATTGGAGAAGGAATCTCACAAATTAACTCCGCAAAAGAGAGTTCTAATGCAAATAAAGGAAGTTCTTCTGGGTTTGGCTTGATAATCGATGGGAAGTCCTTGGATTATTCTCTTAACAAGAATTTGGAAAGGTCCTTCTTTGAGCTTGCCATTAATTGTGCTTCTGTCATATGTTGCCGATCTTCACCCAAACAGAAGGCTCGTGTTACAAGGTTGGTAAAATTGGGAACGGGAAAGACAACATTATCTATTGGTGATGGGGCAAATGATGTTGGCATGCTTCAGGAGGCTGATATTGGAGTTGGTATCAGTGGTGCTGAAGGGATGCAGGCTGTAATGGCAAGTGATTTTGCAATTGCTCAATTCCGGTTTCTAGAGCGTCTTTTGTTGGTACATGGTCATTGGTGTTATCGGCGTATATCAATGATGATATGCTATTTTTTCTATAAAAACATTGCATTTGGATTTACCCTTTTTTGGTTTGAGGCGTATGCTTCTTTCTCTGGTCAAGCTGCTTACAATGATTGGTACATGTCATTTTACAATGTCTTCTTCACTTCACTTCCAGTGATCGCTCTAGGTGTTTTTGATCAAGATGTTTCTGCCAAACTTTGCCTAAAGTATCCCTTTTTATATCTAGAGGGAGTAGAAGACACCCTATTCAGCTGGCCCCGAATTCTAGGGTGGATGTTGAATGGAGTCCTTAGTTCTTTAGTGATATTCTTCTTAACCACTAATTCTGTGTTGAATCAAGCCTTCAGAAGAGATGGTCCAAGGAAAACTAATACACCTCAGAGAGAGATTGAAGCAAAGGGAGCTGTGAAATGTAAATGCTTCTAA 3216 0.4021 MPGGSSKRRIHFSKLYSFSCLKSPFRDGHSQIGQKGYSRVVYCNDPDNPEAVQLSYGGNYVSTTKYTAFNFIPKSLFEQFRRVANIYFLIVACVSFSPLAPFTALSIVAPLLVVIGATMAKEAVEDWRRRKQDVEANNRKVQVYGRNYTFTETRWKKLRVGDIIKVYKDEYFPADLLLLSSSYGDGVCYVETMNLDGETNLKLKHALEVTVHLHDEKSLQKFRAMVKCEDPNENLYSFIGTLQHDGKEYPLSLQQILLRDSKLKNTDFIYGIVIFTGHDTKVMQNSTDPPSKRSKIERKMDKIIYILFSTLVLISFIGSVFFGIETKKDISGGRYRRWYLRPDNATVFYDPRRATLAAVLHFLTAIMLYGYLIPISLYVSIEIVKVLQSIFINQDQEMYHEESDRPAHARTSNLNEELGQVDTILSDKTGTLTCNSMEFVKCSIGGIAYGRGMTEVEKALARRGKGGESDDVDSGSSDFLGQNNESVDSLHPVKGFNFSDERLVNGRWVNEPYPDFIQKFFRVLAICHTAIPDEDKESGEISYEAESPDEAAFVIAARELGFEFFARTQTSISLHELNYKSGKKVDSRVYQLLHVLEFSSSRKRMSVIVRNEENQILLLCKGADSVMFERLSQHGRQFEVETRDHIKRYAEAGLRTLVVTYRELDEEEYKLWDKEFSKVKTSVTEDRDALVDAAADRMERDLMLLGATAVEDRLQKGVPECIEKLARAKIKLWVLTGDKMETAVNIGYACSLLRKDMKQIVITLDSSDILYLEKQGDKQALAKASLESIKKQIGEGISQINSAKESSNANKGSSSGFGLIIDGKSLDYSLNKNLERSFFELAINCASVICCRSSPKQKARVTRLVKLGTGKTTLSIGDGANDVGMLQEADIGVGISGAEGMQAVMASDFAIAQFRFLERLLLVHGHWCYRRISMMICYFFYKNIAFGFTLFWFEAYASFSGQAAYNDWYMSFYNVFFTSLPVIALGVFDQDVSAKLCLKYPFLYLEGVEDTLFSWPRILGWMLNGVLSSLVIFFLTTNSVLNQAFRRDGPRKTNTPQREIEAKGAVKCKCF* 1072
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0090 1071 Pfam E1-E2 ATPase 137 331 - -
Vra1g0090 1071 Gene3D - 543 681 IPR023299 GO:0000166
Vra1g0090 1071 Pfam Cation transport ATPase (P-type) 527 633 - -
Vra1g0090 1071 Gene3D - 112 288 - -
Vra1g0090 1071 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 56 1049 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Vra1g0090 1071 SUPERFAMILY HAD-like 420 931 IPR036412 -
Vra1g0090 1071 Pfam Phospholipid-translocating P-type ATPase C-terminal 904 1046 IPR032630 -
Vra1g0090 1071 CDD P-type_ATPase_APLT_Dnf-like 58 1036 - -
Vra1g0090 1071 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 9-RELATED 6 1050 - -
Vra1g0090 1071 SUPERFAMILY Calcium ATPase, transduction domain A 144 285 IPR008250 -
Vra1g0090 1071 SFLD Haloacid Dehalogenase 407 927 - -
Vra1g0090 1071 Pfam Phospholipid-translocating ATPase N-terminal 41 104 IPR032631 -
Vra1g0090 1071 PRINTS P-type cation-transporting ATPase superfamily signature 425 439 - -
Vra1g0090 1071 PRINTS P-type cation-transporting ATPase superfamily signature 876 895 - -
Vra1g0090 1071 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 432 668 IPR023299 GO:0000166
Vra1g0090 1071 SFLD p-type atpase 407 927 IPR044492 -
Vra1g0090 1071 Gene3D - 701 916 IPR023214 -
Vra1g0090 1071 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 6 1050 - -
Vra1g0090 1071 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 844 959 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra1g0090 1071 ProSitePatterns E1-E2 ATPases phosphorylation site. 427 433 IPR018303 -
Vra1g0090 1071 Coils Coil 117 137 - -
Vra1g0090 1071 SUPERFAMILY Calcium ATPase, transmembrane domain M 50 1037 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0090 Vra-Chr1 1125617 1134056 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0090 1 1068 Primary Pumps ATPases AT1G68710 63.373 0.0 1455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0090 K01530 - gmx:100817020 1927.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0090 1 1125617 1134056 Vra1g0090 1 1125617 1134056 ECH