Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0089 ATGGAGCATGTTTTGGAAAAGAGATTCCCTCTTAATGCAGAAGATTACAAGTTATATGAAGAAGTTGGTGAAGGCGTTAGTGCCTCTGTATACAGGGCTCTCTGTGTTCCTCTCAACGAGATAGTTGCAATCAAGGTTCTGGATCTAGAGAAGTGCAATAATGATTTGGATGGAATTCGAAGAGAGGTACAGACGATGAGCTTGATTGATCATCCAAATGTTTTACAGGCACATTGCTCTTTTACTACTGGACACAATCTATGGGTTGTAATGCCATACATGGCAGGGGGTTCTTGCCTCCATATAATGAAATCTGCCTATCCAGAAGGTTTTGAAGAGCCAGTTATTGCTACTTTATTGCATGAAGTTCTCAAAGCTCTTGTTTATCTTCATGCCCATGGTCACATACATAGAGATGTTAAGGCGGGGAATATTCTGCTTGATTCTAATGGTGCAGTCAAACTAGCTGACTTTGGAGTGTCAGCATGTATGTTTGATACTGGAGACAGGCAACGTTCAAGGAACACTTTTGTTGGAACACCTTGCTGGATGGCTCCAGAAGTCATGCAGCAATTACATGGATATGATTTTAAAGCAGATATATGGTCATTTGGTATAACAGCACTTGAACTTGCTCATGGTCATGCCCCATTTTCCAAGTATCCACCTATGAAAGTTTTGCTTATGACATTACAAAATGCCCCTCCAGGTCTTGATTATGAAAGAGACAAGAGATTTTCAAAGGCTTTCAAGGAGTTGGTTGCCACCTGCTTAGTAAAAGACCCAAAAAAGCGTCCTAGTTCAGAAAAGCTATTGAAGCACCACTTCTTTAGACATGCACGTGCTAGCAAATATCTTGCTCGCACCATTCTAGATGGGCTTGCTCCTTTAGGAGATCGTTTTAGATCACTGAAGGCTAAAGAGGCAGATTTATTGGTGCAGAACAAGGCTCTTTATGAGGATAAGGATCAGTTATCTCAGAAAGAATATATTCGAGGAATTAGTGCCTGGAATTTTAACCTGGAAGATTTAAAAAGTCAAGCTGCTCTTATTCAAGATGATGACATACCTAATGTAGATGAGCCACAAAAGGATAAGAAGGAAAAAGTCAGATCAGATGACTTCAGGGATTCTGCAGAGACGTTATCATCTGTACCAGCTAATCATTCCGATGATGCACCCACTCAGAACAAGGAGGATGGATTTAATAATCTTCAGGATTTGGAGGGTTCGCTTGCTTCATTTCCTAGTAAACCTCTTCAAGCACTTAAAGGATGTTTTGATATGTGTGAGGATGACGTTAATAACAACAGTCCAAGAGATCTGGATCATGATTATGGAAATGAAAGTTCTGGGCCAAGTTCTTCATTACAACAAAACACCAACAATCAACAAAAAAAGTTTCTGAGTGGTTCCTTGTTACCTGATAATTTCCTTTTTCCCAAAAAGGTTGTTACTGACGGGGACAGGGATTACCTACAACCAAAGTATTCTTCGGAGAGGAATCACAGTGGGCCATTGCAATATCGTCAGAAGAGAGATACCAACAACCTTCCATTGGTTGATGACACATCAGATGGAGCGTTTGTCCAGCGTAGGGGGCGGTTTAAGGTCACATCGGCTGATCTCAGTCCAATGGGTCCTTCAAACAATGCTTCTGGCCCAGTTGTTAGTCCTACCAGCCCACCAAATCAAAATTTCGTGGCTGGCGCTATTCTTCCATCGCTTCAGTGCATCTTGCAACAGAACGGTTTGCAAAGGGAAGAGATTATAAAATTAATAAAGTATGCAGAGCAATCTTCTGGTAAGAATGCAGAATCCGTAGAGGCAGGGGCAGTTGATAGTTTGCAGGTACCTGCAACAACCAGGGAGAAGGAGCTGCATTTTCAGGTGGTTCAACTCCAACAGAGCATTGGAAGCCTTGTTGAGGAATTACAAAGACAAAAGATGAAAAATGTTCAGTTAGAGAAACAATTGAGCAGTATGATTAACAAAATGGAGAAGTGA 2007 0.4126 MEHVLEKRFPLNAEDYKLYEEVGEGVSASVYRALCVPLNEIVAIKVLDLEKCNNDLDGIRREVQTMSLIDHPNVLQAHCSFTTGHNLWVVMPYMAGGSCLHIMKSAYPEGFEEPVIATLLHEVLKALVYLHAHGHIHRDVKAGNILLDSNGAVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVMQQLHGYDFKADIWSFGITALELAHGHAPFSKYPPMKVLLMTLQNAPPGLDYERDKRFSKAFKELVATCLVKDPKKRPSSEKLLKHHFFRHARASKYLARTILDGLAPLGDRFRSLKAKEADLLVQNKALYEDKDQLSQKEYIRGISAWNFNLEDLKSQAALIQDDDIPNVDEPQKDKKEKVRSDDFRDSAETLSSVPANHSDDAPTQNKEDGFNNLQDLEGSLASFPSKPLQALKGCFDMCEDDVNNNSPRDLDHDYGNESSGPSSSLQQNTNNQQKKFLSGSLLPDNFLFPKKVVTDGDRDYLQPKYSSERNHSGPLQYRQKRDTNNLPLVDDTSDGAFVQRRGRFKVTSADLSPMGPSNNASGPVVSPTSPPNQNFVAGAILPSLQCILQQNGLQREEIIKLIKYAEQSSGKNAESVEAGAVDSLQVPATTREKELHFQVVQLQQSIGSLVEELQRQKMKNVQLEKQLSSMINKMEK* 669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0089 668 MobiDBLite consensus disorder prediction 352 404 - -
Vra1g0089 668 Pfam Protein kinase domain 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0089 668 MobiDBLite consensus disorder prediction 448 463 - -
Vra1g0089 668 MobiDBLite consensus disorder prediction 357 378 - -
Vra1g0089 668 MobiDBLite consensus disorder prediction 437 463 - -
Vra1g0089 668 ProSiteProfiles Protein kinase domain profile. 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0089 668 MobiDBLite consensus disorder prediction 539 560 - -
Vra1g0089 668 SMART serkin_6 16 277 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0089 668 MobiDBLite consensus disorder prediction 498 522 - -
Vra1g0089 668 SUPERFAMILY Protein kinase-like (PK-like) 13 301 IPR011009 -
Vra1g0089 668 ProSitePatterns Protein kinases ATP-binding region signature. 22 45 IPR017441 GO:0005524
Vra1g0089 668 CDD STKc_OSR1_SPAK 14 277 - -
Vra1g0089 668 MobiDBLite consensus disorder prediction 543 560 - -
Vra1g0089 668 Coils Coil 638 668 - -
Vra1g0089 668 Gene3D Phosphorylase Kinase; domain 1 5 92 - -
Vra1g0089 668 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 666 - -
Vra1g0089 668 MobiDBLite consensus disorder prediction 379 404 - -
Vra1g0089 668 Gene3D Transferase(Phosphotransferase) domain 1 97 315 - -
Vra1g0089 668 MobiDBLite consensus disorder prediction 492 526 - -
Vra1g0089 668 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 1 666 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0089 Vra-Chr1 1088814 1102745 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0089 1 665 MAP Kinase Kinase Kinase Kinase AT5G14720 66.084 0.0 916
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Vra1g0089 Pkinase 2.9e-59 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0089 K08835 - gmx:100784402 1215.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0089 1 1088814 1102745 Vra1g0089 1 1088814 1102745 ECH