Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0087 ATGGCTGCACATCACGCGGAACCGACGAAGCTGCGGTGGGGCGAGCTGGAGGAGGATGACGGCGAGGATCTGGACTTCCTCCTCCCGCCGCGACAGGTCATAGGCCCTGACGAGAACGGCATCAAGAAAATAATTGAGTACAAGTTCGACGACGACGGAAACAAGGTCAAGATCACCACCACCACGCGCACCCGTAAGCTCGCCAACGCGCGTCTCAGCAAACGTGCCGTCGAGCGTCGCTCCTGGCCTAAGTTCGGCGATGCCGTCCACGAAGACGTCGGCAGCCGCCTCACCATGGTCTCCACCGAAGAGATCCTCCTCGAACGCCCCAAGCCTCTCGGCTCGAAAACAGAGGAGCCGAAGACTGGTGGAGACCCCTTAGCTCAGTTCCAGAAAGGTGCTGTTCTCATGGTGTGTAGGACATGTGGGAAGAAGGGTGATCACTGGACTTCAAGGTGTCCATACAAGGATCTAGCCCCACCATCTGAGGGATTCGTGGATAAGCCTGCAGCATTAGATGCTACAGCAGCAACAGGTGGTGCAACCAAGGGAGCCTACGTGCCTCCTGGTATGAGGGCAGGTGCTGAGAGGAGTGGTGGATCTGATATGCGGCGGAGGAACGATGAGAACTCTGTGAGGGTAACCAATCTCTCAGAAGACACAAGAGAGCCTGATTTGATGGAGCTGTTCCGTCCTTTTGGTCCTGTAAGCAGAGTTTATGTTGCCATTGATCAAAAGACCAGCATGAGCAGAGGTTTTGGCTTTGTCAACTTTGTGAACAGGGAAGATGCTCAACGGGCTATCACCAAACTCAATGGGTATGGATACGACAATCTCATACTCAGAGTTGAATGGGCAACCCCAAGGGCGAGCTAG 876 0.5491 MAAHHAEPTKLRWGELEEDDGEDLDFLLPPRQVIGPDENGIKKIIEYKFDDDGNKVKITTTTRTRKLANARLSKRAVERRSWPKFGDAVHEDVGSRLTMVSTEEILLERPKPLGSKTEEPKTGGDPLAQFQKGAVLMVCRTCGKKGDHWTSRCPYKDLAPPSEGFVDKPAALDATAATGGATKGAYVPPGMRAGAERSGGSDMRRRNDENSVRVTNLSEDTREPDLMELFRPFGPVSRVYVAIDQKTSMSRGFGFVNFVNREDAQRAITKLNGYGYDNLILRVEWATPRAS* 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0087 291 SMART rrm1_1 211 284 IPR000504 GO:0003723
Vra1g0087 291 Gene3D - 187 291 IPR012677 -
Vra1g0087 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 212 278 IPR000504 GO:0003723
Vra1g0087 291 Hamap Eukaryotic translation initiation factor 3 subunit G [EIF3G]. 10 290 IPR017334 GO:0003743|GO:0005737|GO:0005852
Vra1g0087 291 Pfam Eukaryotic translation initiation factor 3 subunit G 32 158 IPR024675 -
Vra1g0087 291 PIRSF Transl_init_eIF-3_RNA-bind 2 291 IPR017334 GO:0003743|GO:0005737|GO:0005852
Vra1g0087 291 SUPERFAMILY RNA-binding domain, RBD 196 289 IPR035979 GO:0003676
Vra1g0087 291 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 290 - -
Vra1g0087 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 210 288 IPR000504 GO:0003723
Vra1g0087 291 MobiDBLite consensus disorder prediction 180 210 - -
Vra1g0087 291 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 3 SUBUNIT G 7 290 - -
Vra1g0087 291 CDD RRM_eIF3G_like 211 286 IPR034240 -
Vra1g0087 291 CDD eIF3G 39 157 IPR024675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0087 Vra-Chr1 1064655 1066470 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0087 9 289 Eukaryotic Initiation Factors Gene Family AT3G11400 68.590 1.71e-149 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0087 K03248 - gmx:100818725 535.798