Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0083 ATGATTTCCACGTCTTCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTTCTCTCTCTTATGTGTATATGTACAAAATAATGGACAAAAAACCATGCAACTCACCATCATCTCATGATCCTGAAGTGAGAAAGGGACCATGGACCATGGAAGAAGATTTGATCTTGATCAACTATATTGCAAATCATGGTGAAGGTGTTTGGAATTCTCTAGCCAAAGCTTCTGGTCTTAAACGAACTGGAAAAAGTTGTCGACTTCGTTGGCTAAACTACCTTCGTCCTGATGTTAGAAGAGGGAACATTACAACAGAAGAACAGCTTTTGATCTTTGAGCTTCATGCAAAGTGGGGTAATAGGTGGTCCAAAATTGCAAAGCATCTTCCAGGAAGAACCGACAATGAGATTAAGAACTTTTGGAGAACCAGAATCCAGAAGCACATGAAGCAAGCTGAGAATTCACAGCAACAGGGTAATAATAACAGTAACATTTCAGAGACAAATGATCATCATCATCACCATCAACATCATCAACATCATCATCATCAAGCCAGCTCTAGCACAAGCCTAGCATCCAACATGGCACTGCAAATTGAGTCTTACTCCACACCCTCATATCAAGAAACTTTGGAGCCATTTCCATCACAGTTCCCTCCAATCACTGATCAATCAAGTTCATGTACCAATCACAACATCAACAGCAACACCAACTATTGGAACATAGAGGATTTGTGGTCTATGCATATGCTTAATGGGGATTGA 756 0.3995 MISTSSLLLLLLLLLLSLSYVYMYKIMDKKPCNSPSSHDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKASGLKRTGKSCRLRWLNYLRPDVRRGNITTEEQLLIFELHAKWGNRWSKIAKHLPGRTDNEIKNFWRTRIQKHMKQAENSQQQGNNNSNISETNDHHHHHQHHQHHHHQASSSTSLASNMALQIESYSTPSYQETLEPFPSQFPPITDQSSSCTNHNINSNTNYWNIEDLWSMHMLNGD* 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0083 251 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 27 248 IPR044676 GO:0003700|GO:0006355|GO:0043565
Vra1g0083 251 PANTHER TRANSCRIPTION FACTOR MYB21-RELATED 27 248 - -
Vra1g0083 251 SMART sant 43 93 IPR001005 -
Vra1g0083 251 SMART sant 96 144 IPR001005 -
Vra1g0083 251 MobiDBLite consensus disorder prediction 147 163 - -
Vra1g0083 251 CDD SANT 101 140 IPR001005 -
Vra1g0083 251 CDD SANT 46 91 IPR001005 -
Vra1g0083 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 92 146 IPR017930 -
Vra1g0083 251 ProSiteProfiles Myb-like domain profile. 92 142 IPR001005 -
Vra1g0083 251 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 39 91 IPR017930 -
Vra1g0083 251 Pfam Myb-like DNA-binding domain 44 91 IPR001005 -
Vra1g0083 251 Pfam Myb-like DNA-binding domain 97 140 IPR001005 -
Vra1g0083 251 MobiDBLite consensus disorder prediction 145 188 - -
Vra1g0083 251 Gene3D - 100 187 - -
Vra1g0083 251 SUPERFAMILY Homeodomain-like 41 138 IPR009057 -
Vra1g0083 251 Gene3D - 44 96 - -
Vra1g0083 251 ProSiteProfiles Myb-like domain profile. 39 91 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0083 Vra-Chr1 1008717 1012218 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0083 29 251 MYB Transcription Factor Family AT3G01530 55.605 1.05e-80 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra1g0083 Myb_DNA-binding 2.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0083 K09422 - gmx:100305972 327.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0083 1 1008717 1012218 Vra1g0083 1 1008717 1012218 ECH