Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra1g0078 | ATGGCCGCCACAGCAACTGCCTCTTCAATGGGTCCGCGGTATGCACCACCAGATCCGACACTCCCTAAACCATGGAAGGGTCTCGTGGATGGCAAGACGGGGTATCTTTACTTTTGGAATCCCGAGACCAATGTCACCCAGTATGAGAGGCCCTCGAGCTCAGCTGCTCCACCAAAGTCCTCTTCAGTGCCTAGCTCTTCTGTCCAGGTTCAACATACGTCTCAAGGGTCGCAACGTGGTCGTAGTCCTGATTTCAGTGATAGGTATGATAGAAATGGCAGTGGTGGGTCAAATGATGCTTCACGGAATAATCAGAGTTCCAAAGGTGGAAGTTACAGTTCTCATAGTGTGCCAACTGGAACAAATGCTGCTGCCAATGTTAGTTATTCTGTCAAAGGTCATGGGGCATCGGATGCTGCAGCTGTGCTATCTCCTGAGTCTTATCGAAGTCGGCATGAAATAACTGTGACTGGAGACAATGTGCCACCGCCTCTTGCTTCATTTGGGTCTAGTGGCTTTCCACCGGAGGTTCTGAGAGAGGTACAAAATGCTGGTTTCTCAGCCCCAACTCCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAAGTAGAGATATAGTTGCCATTGCAAAAACAGGCTCAGGGAAAACCTTGGGATATTTAATTCCAGCATTTGTTCACCTCAAGCGCTGTGGTAATAACTCCAAAATGGGCCCCACTGCATTGGTACTTTCACCAACAAGGGAGTTGGCGACACAAATACAAGATGAGGCTGTGAAGTTTGGGAAATCTTCAAGAATTTCTTGTGCATGTTTGTATGGAGGAGCACCCAAGGGTCCTCAACTCAGAGACATTGACCGGGGAGCAGATATTGTGGTAGCCACTCCTGGTCGCTTGAATGATATTCTTGAGATGAGAAGAATTAGTCTTCATCAGGTCTCTTACCTGGTGCTAGATGAGGCAGACCGGATGCTGGATATGGGTTTCGAACCTCAAATTAGGAAAATTGTTAATGAGGTGCCTAATCGCAGGCAAACACTCATGTTTACTGCAACTTGGCCAAAGGAGGTTAGGAAAATTGCAGCTGATCTACTGGTCAAACCTGTCCAGGTGAACATTGGCAATGTGGACGAGCTTGTTGCTAACAAGTCCATTACTCAGCATGTTGAAGTGTTGCCCCTGATGGAGAAACAGAGACGTCTGGAACATATTTTACGGTCACAGGATCAAGGATCAAAGATAATCATATTCTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTACTCTGACACGTCAGTTCGGAGCTGCTGCTATACATGGGGATAAATCCCAGGCTGAGAGGGATCACGTGTTGAGTCAGTTTCGAACTGGGAGGTCACCTGTTCTTGTAGCTACAGATGTTGCTGCCCGGGGACTGGATATCAAGGACATTAGGGTGGTTGTCAATTACGACTTCCCCACAGGAGTTGAAGACTATGTTCATAGGATTGGAAGGACTGGGAGGGCTGGAGCCACTGGGCTAGCTTACACTTTCTTTGGTGACCAGGATGCAAAATATGCTACGGATCTCATCAAAGTTTTGGAAGGTGCAAATCAGAAAGTACCTCCAGAACTCCGTGATATGTCATCACGGGGTGGTAGTGGGATGGGAAGATCCAGACGATGGGGTTCTGGTGGAAGAGGTGGACGCAGTGATTCTGGATATGGTGGAAGGAATAATGACTCAGGATATGGTGGAAGGGGTAGTGATTCAAATTATGGAGCTAGGGGAAATGCTTCTTCTGGGAGAGGAGGCCGTGGTTTTGACTATGATTCTCAGAGGAATGATCGGGGTCTGAGTCCAGACAAGGGATCTAAATGGAGCGATCGCTACAAAAGCGTGAACCGTGAACGTAGTCGTAGCCCCGACAGGGCTGCACTACCTCAACATTCTCAAAGCAGCTTTCACAAGGCAATGATGGAACGTGGTGGATGGGGTGATAGTGATCGCAATAAGAGCTCTAACAGAGATCGAAGCCGCAGTCCTAGCCCCTACAGACAGGAAAGGACTGCAGCAGTTCGTGAACGATCCCCAGTTCACAGTTTTCATCGATCGATGATGGGACAAGGACAATCATCCCCACCACGTCAGCGTGCACGTAGTCCTTATCGAAACTCATCACCCTCCCAGGGCGGTGGTAGGTCTTATAATAGTCCTCCAAAAGAGTGGGGAGGCAATGGAGGAGAGGTGGAGGAAGGGATGATTCCAGAGGAAGATGGAATGATAGGTCAAGGTGGAGATTAG | 2289 | 0.4841 | MAATATASSMGPRYAPPDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPSSSAAPPKSSSVPSSSVQVQHTSQGSQRGRSPDFSDRYDRNGSGGSNDASRNNQSSKGGSYSSHSVPTGTNAAANVSYSVKGHGASDAAAVLSPESYRSRHEITVTGDNVPPPLASFGSSGFPPEVLREVQNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPAFVHLKRCGNNSKMGPTALVLSPTRELATQIQDEAVKFGKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPNRRQTLMFTATWPKEVRKIAADLLVKPVQVNIGNVDELVANKSITQHVEVLPLMEKQRRLEHILRSQDQGSKIIIFCSTKKMCDQLARTLTRQFGAAAIHGDKSQAERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYATDLIKVLEGANQKVPPELRDMSSRGGSGMGRSRRWGSGGRGGRSDSGYGGRNNDSGYGGRGSDSNYGARGNASSGRGGRGFDYDSQRNDRGLSPDKGSKWSDRYKSVNRERSRSPDRAALPQHSQSSFHKAMMERGGWGDSDRNKSSNRDRSRSPSPYRQERTAAVRERSPVHSFHRSMMGQGQSSPPRQRARSPYRNSSPSQGGGRSYNSPPKEWGGNGGEVEEGMIPEEDGMIGQGGD* | 763 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra1g0078 | 762 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 89 | 630 | - | - | |
Vra1g0078 | 762 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 197 | 371 | IPR014001 | - | |
Vra1g0078 | 762 | MobiDBLite | consensus disorder prediction | 47 | 82 | - | - | |
Vra1g0078 | 762 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 166 | 194 | IPR014014 | GO:0003724 | |
Vra1g0078 | 762 | ProSiteProfiles | WW/rsp5/WWP domain profile. | 19 | 53 | IPR001202 | GO:0005515 | |
Vra1g0078 | 762 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 317 | 325 | IPR000629 | - | |
Vra1g0078 | 762 | MobiDBLite | consensus disorder prediction | 91 | 119 | - | - | |
Vra1g0078 | 762 | MobiDBLite | consensus disorder prediction | 657 | 696 | - | - | |
Vra1g0078 | 762 | Gene3D | - | 376 | 547 | IPR027417 | - | |
Vra1g0078 | 762 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 238 | 522 | IPR027417 | - | |
Vra1g0078 | 762 | SMART | ultradead3 | 185 | 388 | IPR014001 | - | |
Vra1g0078 | 762 | Pfam | DEAD/DEAH box helicase | 190 | 360 | IPR011545 | GO:0003676|GO:0005524 | |
Vra1g0078 | 762 | CDD | SF2_C_DEAD | 385 | 514 | - | - | |
Vra1g0078 | 762 | CDD | WW | 22 | 50 | IPR001202 | GO:0005515 | |
Vra1g0078 | 762 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
Vra1g0078 | 762 | Gene3D | - | 17 | 64 | - | - | |
Vra1g0078 | 762 | SMART | helicmild6 | 425 | 505 | IPR001650 | - | |
Vra1g0078 | 762 | ProSitePatterns | WW/rsp5/WWP domain signature. | 25 | 51 | IPR001202 | GO:0005515 | |
Vra1g0078 | 762 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 400 | 544 | IPR001650 | - | |
Vra1g0078 | 762 | SMART | ww_5 | 20 | 53 | IPR001202 | GO:0005515 | |
Vra1g0078 | 762 | MobiDBLite | consensus disorder prediction | 536 | 762 | - | - | |
Vra1g0078 | 762 | Pfam | Helicase conserved C-terminal domain | 397 | 505 | IPR001650 | - | |
Vra1g0078 | 762 | MobiDBLite | consensus disorder prediction | 47 | 119 | - | - | |
Vra1g0078 | 762 | SUPERFAMILY | WW domain | 12 | 52 | IPR036020 | GO:0005515 | |
Vra1g0078 | 762 | Pfam | WW domain | 21 | 51 | IPR001202 | GO:0005515 | |
Vra1g0078 | 762 | Gene3D | - | 142 | 375 | IPR027417 | - | |
Vra1g0078 | 762 | PANTHER | DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 | 89 | 630 | - | - | |
Vra1g0078 | 762 | MobiDBLite | consensus disorder prediction | 699 | 731 | - | - | |
Vra1g0078 | 762 | MobiDBLite | consensus disorder prediction | 604 | 639 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra1g0078 | Vra-Chr1 | 920852 | 926456 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra1g0078 | 164 | 543 | Eukaryotic Initiation Factors Gene Family | AT3G19760 | 33.247 | 1.15e-65 | 222 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra1g0078 | K12823 | - | gmx:100816455 | 1212.21 |