Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0078 ATGGCCGCCACAGCAACTGCCTCTTCAATGGGTCCGCGGTATGCACCACCAGATCCGACACTCCCTAAACCATGGAAGGGTCTCGTGGATGGCAAGACGGGGTATCTTTACTTTTGGAATCCCGAGACCAATGTCACCCAGTATGAGAGGCCCTCGAGCTCAGCTGCTCCACCAAAGTCCTCTTCAGTGCCTAGCTCTTCTGTCCAGGTTCAACATACGTCTCAAGGGTCGCAACGTGGTCGTAGTCCTGATTTCAGTGATAGGTATGATAGAAATGGCAGTGGTGGGTCAAATGATGCTTCACGGAATAATCAGAGTTCCAAAGGTGGAAGTTACAGTTCTCATAGTGTGCCAACTGGAACAAATGCTGCTGCCAATGTTAGTTATTCTGTCAAAGGTCATGGGGCATCGGATGCTGCAGCTGTGCTATCTCCTGAGTCTTATCGAAGTCGGCATGAAATAACTGTGACTGGAGACAATGTGCCACCGCCTCTTGCTTCATTTGGGTCTAGTGGCTTTCCACCGGAGGTTCTGAGAGAGGTACAAAATGCTGGTTTCTCAGCCCCAACTCCAATTCAGGCACAGTCATGGCCCATTGCTCTTCAAAGTAGAGATATAGTTGCCATTGCAAAAACAGGCTCAGGGAAAACCTTGGGATATTTAATTCCAGCATTTGTTCACCTCAAGCGCTGTGGTAATAACTCCAAAATGGGCCCCACTGCATTGGTACTTTCACCAACAAGGGAGTTGGCGACACAAATACAAGATGAGGCTGTGAAGTTTGGGAAATCTTCAAGAATTTCTTGTGCATGTTTGTATGGAGGAGCACCCAAGGGTCCTCAACTCAGAGACATTGACCGGGGAGCAGATATTGTGGTAGCCACTCCTGGTCGCTTGAATGATATTCTTGAGATGAGAAGAATTAGTCTTCATCAGGTCTCTTACCTGGTGCTAGATGAGGCAGACCGGATGCTGGATATGGGTTTCGAACCTCAAATTAGGAAAATTGTTAATGAGGTGCCTAATCGCAGGCAAACACTCATGTTTACTGCAACTTGGCCAAAGGAGGTTAGGAAAATTGCAGCTGATCTACTGGTCAAACCTGTCCAGGTGAACATTGGCAATGTGGACGAGCTTGTTGCTAACAAGTCCATTACTCAGCATGTTGAAGTGTTGCCCCTGATGGAGAAACAGAGACGTCTGGAACATATTTTACGGTCACAGGATCAAGGATCAAAGATAATCATATTCTGTTCTACCAAGAAAATGTGTGATCAACTTGCTCGTACTCTGACACGTCAGTTCGGAGCTGCTGCTATACATGGGGATAAATCCCAGGCTGAGAGGGATCACGTGTTGAGTCAGTTTCGAACTGGGAGGTCACCTGTTCTTGTAGCTACAGATGTTGCTGCCCGGGGACTGGATATCAAGGACATTAGGGTGGTTGTCAATTACGACTTCCCCACAGGAGTTGAAGACTATGTTCATAGGATTGGAAGGACTGGGAGGGCTGGAGCCACTGGGCTAGCTTACACTTTCTTTGGTGACCAGGATGCAAAATATGCTACGGATCTCATCAAAGTTTTGGAAGGTGCAAATCAGAAAGTACCTCCAGAACTCCGTGATATGTCATCACGGGGTGGTAGTGGGATGGGAAGATCCAGACGATGGGGTTCTGGTGGAAGAGGTGGACGCAGTGATTCTGGATATGGTGGAAGGAATAATGACTCAGGATATGGTGGAAGGGGTAGTGATTCAAATTATGGAGCTAGGGGAAATGCTTCTTCTGGGAGAGGAGGCCGTGGTTTTGACTATGATTCTCAGAGGAATGATCGGGGTCTGAGTCCAGACAAGGGATCTAAATGGAGCGATCGCTACAAAAGCGTGAACCGTGAACGTAGTCGTAGCCCCGACAGGGCTGCACTACCTCAACATTCTCAAAGCAGCTTTCACAAGGCAATGATGGAACGTGGTGGATGGGGTGATAGTGATCGCAATAAGAGCTCTAACAGAGATCGAAGCCGCAGTCCTAGCCCCTACAGACAGGAAAGGACTGCAGCAGTTCGTGAACGATCCCCAGTTCACAGTTTTCATCGATCGATGATGGGACAAGGACAATCATCCCCACCACGTCAGCGTGCACGTAGTCCTTATCGAAACTCATCACCCTCCCAGGGCGGTGGTAGGTCTTATAATAGTCCTCCAAAAGAGTGGGGAGGCAATGGAGGAGAGGTGGAGGAAGGGATGATTCCAGAGGAAGATGGAATGATAGGTCAAGGTGGAGATTAG 2289 0.4841 MAATATASSMGPRYAPPDPTLPKPWKGLVDGKTGYLYFWNPETNVTQYERPSSSAAPPKSSSVPSSSVQVQHTSQGSQRGRSPDFSDRYDRNGSGGSNDASRNNQSSKGGSYSSHSVPTGTNAAANVSYSVKGHGASDAAAVLSPESYRSRHEITVTGDNVPPPLASFGSSGFPPEVLREVQNAGFSAPTPIQAQSWPIALQSRDIVAIAKTGSGKTLGYLIPAFVHLKRCGNNSKMGPTALVLSPTRELATQIQDEAVKFGKSSRISCACLYGGAPKGPQLRDIDRGADIVVATPGRLNDILEMRRISLHQVSYLVLDEADRMLDMGFEPQIRKIVNEVPNRRQTLMFTATWPKEVRKIAADLLVKPVQVNIGNVDELVANKSITQHVEVLPLMEKQRRLEHILRSQDQGSKIIIFCSTKKMCDQLARTLTRQFGAAAIHGDKSQAERDHVLSQFRTGRSPVLVATDVAARGLDIKDIRVVVNYDFPTGVEDYVHRIGRTGRAGATGLAYTFFGDQDAKYATDLIKVLEGANQKVPPELRDMSSRGGSGMGRSRRWGSGGRGGRSDSGYGGRNNDSGYGGRGSDSNYGARGNASSGRGGRGFDYDSQRNDRGLSPDKGSKWSDRYKSVNRERSRSPDRAALPQHSQSSFHKAMMERGGWGDSDRNKSSNRDRSRSPSPYRQERTAAVRERSPVHSFHRSMMGQGQSSPPRQRARSPYRNSSPSQGGGRSYNSPPKEWGGNGGEVEEGMIPEEDGMIGQGGD* 763
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0078 762 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 89 630 - -
Vra1g0078 762 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 197 371 IPR014001 -
Vra1g0078 762 MobiDBLite consensus disorder prediction 47 82 - -
Vra1g0078 762 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 166 194 IPR014014 GO:0003724
Vra1g0078 762 ProSiteProfiles WW/rsp5/WWP domain profile. 19 53 IPR001202 GO:0005515
Vra1g0078 762 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 317 325 IPR000629 -
Vra1g0078 762 MobiDBLite consensus disorder prediction 91 119 - -
Vra1g0078 762 MobiDBLite consensus disorder prediction 657 696 - -
Vra1g0078 762 Gene3D - 376 547 IPR027417 -
Vra1g0078 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 238 522 IPR027417 -
Vra1g0078 762 SMART ultradead3 185 388 IPR014001 -
Vra1g0078 762 Pfam DEAD/DEAH box helicase 190 360 IPR011545 GO:0003676|GO:0005524
Vra1g0078 762 CDD SF2_C_DEAD 385 514 - -
Vra1g0078 762 CDD WW 22 50 IPR001202 GO:0005515
Vra1g0078 762 MobiDBLite consensus disorder prediction 1 27 - -
Vra1g0078 762 Gene3D - 17 64 - -
Vra1g0078 762 SMART helicmild6 425 505 IPR001650 -
Vra1g0078 762 ProSitePatterns WW/rsp5/WWP domain signature. 25 51 IPR001202 GO:0005515
Vra1g0078 762 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 400 544 IPR001650 -
Vra1g0078 762 SMART ww_5 20 53 IPR001202 GO:0005515
Vra1g0078 762 MobiDBLite consensus disorder prediction 536 762 - -
Vra1g0078 762 Pfam Helicase conserved C-terminal domain 397 505 IPR001650 -
Vra1g0078 762 MobiDBLite consensus disorder prediction 47 119 - -
Vra1g0078 762 SUPERFAMILY WW domain 12 52 IPR036020 GO:0005515
Vra1g0078 762 Pfam WW domain 21 51 IPR001202 GO:0005515
Vra1g0078 762 Gene3D - 142 375 IPR027417 -
Vra1g0078 762 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 40 89 630 - -
Vra1g0078 762 MobiDBLite consensus disorder prediction 699 731 - -
Vra1g0078 762 MobiDBLite consensus disorder prediction 604 639 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Vra1g0078 Vra-Chr1 920852 926456 Dispersed/Transposed
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0078 164 543 Eukaryotic Initiation Factors Gene Family AT3G19760 33.247 1.15e-65 222
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0078 K12823 - gmx:100816455 1212.21
       

Event-related genes


Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0078 1 920852 926456 Vra1g0078 1 920852 926456 ECH