Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0077 ATGGAGTTTGATCCAAGTTTCCAAGGGCAACTACAACACCCATTCCTTTCAACTCATTTTCCTACAAACCCTAACATGATGCCACAAATCCAAACCATGTTTCCCTCACAAAGCCCTATTTTGATTCCACCATCACCACCACCACCACCCATCATGTTTCACCCCAACAACATTTTCCACCATATTCAAGATCATACCTTTGGGGTACCTACCCAAAACCCTAATTTTTTGTTTGAGGGTCCTTTAAAACCCACCACAACCCCTTTTTGTGGGATGTTAACACCTTCTTTAGGGTCTTCCCTAGGAGGTTTTGCCAATGTTTCCCATCACCACCACCCTATGATGTTGCCACCACCAAACAACAACAATGTTTTGCATGGCCAACATGATGGCAAAGTCATATGGGATTTCTCTCAAAAAACCATGATTCATCCATCTCATGCTTCTTCTTCTTCCAACTCACCTTCATGTCTTTCTCTTCCTAATATCACTCAATACAAATGGGAAAGTAATCAAAAGATAAAAATGAAAAAAAATACTAATGATCTCATAATCAAAGGGTGGTGGACTCCTCAAGAGGACAGTAGTCTTGTGGAATTGGTGAATGAATTTGGGTTGAAGAAATGGACCCAAATTGCAAAATTTCTACCCGGAAGGATTGGGAAGCAATGTCGAGAAAGATGGTACAACCATCTTCAGCCAAATATTAAGAAGGAATCATGGACCCTGGAAGAAGACATGATTCTGATGAAAGTTCATCAAGAAATTGGAAACAAATGGTCTGAAATTGCAAAAAGATTACCTGGGAGAACTGAGAACAACATAAAAAACCATTGGAATGGTATCAAGCGTCGACAAGACTTTAAAAGGAACAACAACAAGAACAATGACAACCCTAATTACGATGAATCAATGCTCCATGCATACATCAAAAGGGTTACTGTCACTGAAGAAGCTGCAAGAGTTCAGAAGAAATCTGTCAGCAAGAGTAATAAGAAAGATCAATGTTCATATAACATGCTTGATGGAAATAGCAATTTAGCTAAGAATGTGGGTATATGA 1062 0.3917 MEFDPSFQGQLQHPFLSTHFPTNPNMMPQIQTMFPSQSPILIPPSPPPPPIMFHPNNIFHHIQDHTFGVPTQNPNFLFEGPLKPTTTPFCGMLTPSLGSSLGGFANVSHHHHPMMLPPPNNNNVLHGQHDGKVIWDFSQKTMIHPSHASSSSNSPSCLSLPNITQYKWESNQKIKMKKNTNDLIIKGWWTPQEDSSLVELVNEFGLKKWTQIAKFLPGRIGKQCRERWYNHLQPNIKKESWTLEEDMILMKVHQEIGNKWSEIAKRLPGRTENNIKNHWNGIKRRQDFKRNNNKNNDNPNYDESMLHAYIKRVTVTEEAARVQKKSVSKSNKKDQCSYNMLDGNSNLAKNVGI* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0077 353 PANTHER MYB DOMAIN PROTEIN 100-RELATED 153 325 - -
Vra1g0077 353 Pfam Myb-like DNA-binding domain 189 246 - -
Vra1g0077 353 ProSiteProfiles Myb-like domain profile. 186 232 IPR001005 -
Vra1g0077 353 PANTHER MYB PROTEIN-RELATED 153 325 - -
Vra1g0077 353 ProSiteProfiles Myb-like domain profile. 233 283 IPR001005 -
Vra1g0077 353 CDD SANT 240 283 IPR001005 -
Vra1g0077 353 Gene3D - 185 237 - -
Vra1g0077 353 SUPERFAMILY Homeodomain-like 185 279 IPR009057 -
Vra1g0077 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 233 287 IPR017930 -
Vra1g0077 353 SMART sant 237 285 IPR001005 -
Vra1g0077 353 SMART sant 185 234 IPR001005 -
Vra1g0077 353 MobiDBLite consensus disorder prediction 283 303 - -
Vra1g0077 353 CDD SANT 189 232 IPR001005 -
Vra1g0077 353 Gene3D - 239 302 - -
Vra1g0077 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 181 232 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0077 Vra-Chr1 903334 906159 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0077 177 315 MYB Transcription Factor Family AT4G18770 56.835 6.05e-51 173
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra1g0077 Myb_DNA-bind_6 4.2e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0077 K09422 - gmx:102666249 321.627
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0077 1 903334 906159 Vra1g0077 1 903334 906159 ECH
Vra4g0521 4 9774400 9778005 Vra1g0077 1 903334 906159 ECH