Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0076 ATGAACATGAACATGAACATGTCTGCTTGCAACCCTACCTCTATGATGGAGGCTCATTCCAACCCTGTTACCACCCCTTTCTGTGGAGGCTTTGCTAATGATCACTCTCACCATTCTGTGACGTTGGAGTCAAACAAAAACACAGTCATATGTAAATTTTCGCAGAAAACCATGTCGGTTCATCCATCTCAAACTTCACGTTCCAAATCATCACCATTGCCTTTTTCTCTCTTTAATAACTGTGAATTAGAGATGATGAGTGAATTTCACTGGGACACTGATCAAAATGCAAAGCTCAAAAATGATACCAACATTGCTAATCATCACATAATCAAAGGGCAATGGACTCCTGAAGAAGATAGAGCTCTTTTGGAATTGGTGAGTCAAATCGGACCCAAGAAATGGACACAAATTGCAAGATCACTCCATGGCAGAATTGGGAAGCAATGTCGAGAAAGATGGAAAAACCATCTTCAGCCAAACATTAGGAAGGGATCATGGAGCTTGGAGGAAGACATGATTTTGATCAGAGGGCATCAAGAATTTGGAAGAAAATGGTCAAAGATTGCAAAGAGATTGAGTGGTAGGACTGAGAATGACATCAAGAACCGGTGGAATGCAACCATTCGACGCCAAAACTGCAACAAGAACCGCCGAGCTCACTACAGAGGCTCAATGCTCCATGCCTATGTTAAATGGGTCACTGCAACTGAAGAAAAAGTTTTCAGAAAACCCTCATACAAGAAGAATAAAAATGTGTTTGGATGCACTTGTGATGAGCTAGCTCTTTTGTTGAGCTAG 801 0.4145 MNMNMNMSACNPTSMMEAHSNPVTTPFCGGFANDHSHHSVTLESNKNTVICKFSQKTMSVHPSQTSRSKSSPLPFSLFNNCELEMMSEFHWDTDQNAKLKNDTNIANHHIIKGQWTPEEDRALLELVSQIGPKKWTQIARSLHGRIGKQCRERWKNHLQPNIRKGSWSLEEDMILIRGHQEFGRKWSKIAKRLSGRTENDIKNRWNATIRRQNCNKNRRAHYRGSMLHAYVKWVTATEEKVFRKPSYKKNKNVFGCTCDELALLLS* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0076 266 Gene3D - 111 163 - -
Vra1g0076 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 163 213 IPR017930 -
Vra1g0076 266 PANTHER MYB PROTEIN-RELATED 58 220 - -
Vra1g0076 266 Gene3D - 165 226 - -
Vra1g0076 266 SUPERFAMILY Homeodomain-like 110 205 IPR009057 -
Vra1g0076 266 Pfam Myb-like DNA-binding domain 115 172 - -
Vra1g0076 266 CDD SANT 166 206 IPR001005 -
Vra1g0076 266 CDD SANT 115 158 IPR001005 -
Vra1g0076 266 SMART sant 111 160 IPR001005 -
Vra1g0076 266 SMART sant 163 211 IPR001005 -
Vra1g0076 266 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 107 162 IPR017930 -
Vra1g0076 266 ProSiteProfiles Myb-like domain profile. 159 209 IPR001005 -
Vra1g0076 266 ProSiteProfiles Myb-like domain profile. 107 158 IPR001005 -
Vra1g0076 266 PANTHER MYB DOMAIN PROTEIN 100-RELATED 58 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0076 Vra-Chr1 899036 900842 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0076 110 232 MYB Transcription Factor Family AT4G18770 59.677 1.32e-46 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra1g0076 Myb_DNA-bind_6 3.3e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0076 K09422 - vra:111242362 563.533