Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0075 ATGCAAACTCTTCTTTCTCTTTCACACTCTCCTTCAACTCCACACTTTCCAAACTTCACACCAAGGCCAAAGTTCCTTCCTCAATTCAGCTCCTTCAATACCTTCTCCTTGCCCCCATCTTCTCCTTTGCAGCTCACTGCCACAAAGTCTTCACCTTTCTTCATTTCTTCTCCCAAGCTTGCATCTTTCAGGCTCCTTGCTGCTTCTATCTCTGATGCCAGAAGTGATGAACCAGCCAAAGCTAGTGGGTTGGTTAAAACCCTGCAGCTGGGGGCCATGCTTGCCCTTTGGTACCTCTTGAACATCTACTTCAACATCTACAACAAGCAGGTTCTAAAAGTCTATCCATTTCCAGCCACAGTTACAGCATTTCAATTTGGCTTTGTGTCATTGGTGATTAATTTAATCTGGACTTTCAATCTCCACCCCAGACCAAGCATCAGAGGTTCACAGCTTGCAACACTCCTTCCACTGGCTCTGGCTCACACATTAGGGAATGCCTTGACCAACGTTAGCCTTAGCAAGGTTGCTGTATCTTTCACTCACACAATCAAAGCTATGGAGCCTTTCTTTACTGTTCTTCTTTCTGCTCTTTTCTTGGGTCAGATGCCTACTTTCTGGGTGTTTTCTTCACTTATACCAATAGTTGGAGGAGTGGCATTGGCATCGATGACTGAAGTCTCTTTCAATTGGATTGGCTTCATCACTGCTATGGCAGCTAACGTTACAAATCAATCAAGGAACGTTTTGAGCAAAAAAATGATGACTAGTGAAGAGGAAAGTTTGGACCCTATCAATCTCTATGGAGTTTTAACAATGATTTCCTTCATGTTGTTGGTTCCATATGCCATACTTATGGAGGGTGTCAAGTTTTCTCCTTCATACCTGCAATATGCAGCAAGCCAAGGGCTTAATGTTAGAGAGTTATGTGTTAGAGCAATTTTTTCTGCATTCTGCTTCCATGCTTACCAACAGGTTTCATATATGATATTGGAGATGGTGTCACCTGTGACACACTCAGTTGCAAACAGTGTAAAGCGTGTGGTTATCATTGTTTCTTCAGTCATTTTCTTCCAAACTCCTGTCTCTCCTGTTAATGCACTTGGAACTGCTATTGCTCTTGTTGGAGTTTTCTTGTACTCAAGGGCAAAGAGGATGAAGCCTGTGCAAAAGACAAACTGA 1182 0.4289 MQTLLSLSHSPSTPHFPNFTPRPKFLPQFSSFNTFSLPPSSPLQLTATKSSPFFISSPKLASFRLLAASISDARSDEPAKASGLVKTLQLGAMLALWYLLNIYFNIYNKQVLKVYPFPATVTAFQFGFVSLVINLIWTFNLHPRPSIRGSQLATLLPLALAHTLGNALTNVSLSKVAVSFTHTIKAMEPFFTVLLSALFLGQMPTFWVFSSLIPIVGGVALASMTEVSFNWIGFITAMAANVTNQSRNVLSKKMMTSEEESLDPINLYGVLTMISFMLLVPYAILMEGVKFSPSYLQYAASQGLNVRELCVRAIFSAFCFHAYQQVSYMILEMVSPVTHSVANSVKRVVIIVSSVIFFQTPVSPVNALGTAIALVGVFLYSRAKRMKPVQKTN* 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0075 393 PANTHER PHOSPHOENOLPYRUVATE/PHOSPHATE TRANSLOCATOR 2, CHLOROPLASTIC 51 387 - -
Vra1g0075 393 TIGRFAM tpt: Tpt phosphate/phosphoenolpyruvate translocator 88 390 IPR004696 GO:0016021|GO:0022857|GO:0055085
Vra1g0075 393 PANTHER SOLUTE CARRIER FAMILY 35 51 387 - -
Vra1g0075 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 306 385 - -
Vra1g0075 393 Pfam Triose-phosphate Transporter family 88 381 IPR004853 -
Vra1g0075 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 129 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0075 Vra-Chr1 881941 885831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0075 5 392 Antiporters AT5G33320 55.980 7.11e-138 398
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0075 K15283 - gmx:100819280 578.941
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0075 1 881941 885831 Vra1g0075 1 881941 885831 ECH