Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0072 ATGTCTTTCAAATGTCACAGCAACCAGTGCAAGATTGCAGCTTTTGATGTTGTTATCTTGGCAGTGGCCACCCTCTTGTGTTTCTCACATTCAGCAGTATCTGATCCAAGAATCTCTGAAGTGGGGTTGTACTGTGGCACTCATAGGGCATCACCAAGTAGTAACTATGTTCCTGTTTTCACCAAAGAAATGGAAAGGCTGCAAGAGCTTGTGAGCAAAAGCAACTGGGGCATTCATTCTGAGGAACCGTCATCAACCTCTCCGATCTATGGTTTGGCACAGTGCTTCCAAGATCTTTCCAAGGTTGATTGTCTTCAATGCTTTGCAGCCAGTCGCACCAAGCTACCTCGCTGTGTCCCTTCGGTTTCTGGTCATATTTACCTTGATGGTTGCTTCCTTCGCTATGATAACTACAGTTTCTACTCTGAGGAGACTGACCCTTTGAGGGACACGGTGAACTGCACCACACAGTATGGTGGTGTGGCTGGTGAGGCTGAGAGGTTGGTGTTTGGGAAGAGTGTTGGGAAAGTGGTTGAGAATGTGGTGAGGGTGGCAGTGAATGAGGGAAGAGGGTTTGCAGTGGGAGAAGATGAGGGAGTTTATGCCTTGGCACAGTGCTGGAAAACTGTTGGAGAAAAAGGGTGTGGTGATTGCTTGAAGAAAGCTGGAAATGAGGTTAGAGGGTGTTTGCCTAAGAAGGAAGGGAGAGCCTTGAATTCTGGCTGTTATTTGAGATATTCCACTGTTAAGTTCTACAATCAAGGAGGTGAACATGGTGAAGGAGATGATTCTGCTAGAAAAAGAACCATCATTACAGCAGTCTCAGTCTTGGCTGCAGTTGTTTTAGTTCTCTCTCTTTTGGTCTCTTATGTGGCCTTCACCAAAAAGAGAAAAAAAAACGACTTCATTGAGATTCCCTCTTATTTGAAGAATTCTAGCTTGAATTACAAATATGAAACTCTTGAGAAGGCCACAGATTATTTTAGCACTTCAAGAAAAATAGGCCAAGGAGGAGCTGGTTCTGTGTTCAAAGGGACTCTTCCAAACGGGAAAGATGTTGCTGTTAAGAGATTGATCTTCAATAATAGACAATGGGTGGATGATTTCTTCAATGAAGTGAATTTAATCAGTGGAATGAATCACAAGAACCTTGTCAAGCTATTGGGTTGTAGCATTGAAGGCCCTGAGAGCCTCATTGTGTATGAGTACCTACCTAACAAGAGCTTAGACCATTTCATTTTTGAAAAGGACAAAACAAGGATTCTAAAATGGAAGCAGAGGTTTGAAATAATTGTTGGAATTGCAGAAGGGCTTGCATATCTTCATGGAGGCTCTGAAATAAGAATCATCCATAGAGACATCAAAAGTAGCAATGTTCTTCTTGATGAGAATCTCAATCCCAAGATTGCAGATTTTGGTCTTGCAAGGTGTTTTGGTGCTGATAAAACACATCTAAGCACAGGAATTGCTGGAACACTAGGTTACATGGCTCCTGAGTATCTTATTCAAGGACAACTTACAGATAAAGCAGATGTTTATAGTTTTGGAGTGCTTGTTCTGGAGACTGCAAGTGGCAGGAAGAACAATGTCTTCCGTGAGGATTCTGGTTCTCTTTTGCAAACAATTTGGAAACTTTACCAATCAAACAGATTGGCTGAAGCTGTTGATCCATGCTTGGGAGATGAGTTTCCTGAAAGAGAAGCATCAAGGGTGTTTCAAATTGGATTACTCTGCACACAAGCTTCTGCTTCCCTTAGACCATCCATGGCTCAAGTTGCTTGCATGTTAAGCAATTCAAATTTGGATGTGCCTATACCAAAACAACCTCCATTTTTGAACTCTAGATTGCTCAGCCAAACAGCTCCTTTAGGTTTTAGCATAGATAACTCCTCATCAAACACATTTCAAAAGATTGGTGTGTCTTATAGCCTCTCTCAGTCCTCTAGTTCATGCAGCTTAATTAGGTCATCCAAAAATGAAGAAACAATTTTGGAAGCTTGA 2001 0.4203 MSFKCHSNQCKIAAFDVVILAVATLLCFSHSAVSDPRISEVGLYCGTHRASPSSNYVPVFTKEMERLQELVSKSNWGIHSEEPSSTSPIYGLAQCFQDLSKVDCLQCFAASRTKLPRCVPSVSGHIYLDGCFLRYDNYSFYSEETDPLRDTVNCTTQYGGVAGEAERLVFGKSVGKVVENVVRVAVNEGRGFAVGEDEGVYALAQCWKTVGEKGCGDCLKKAGNEVRGCLPKKEGRALNSGCYLRYSTVKFYNQGGEHGEGDDSARKRTIITAVSVLAAVVLVLSLLVSYVAFTKKRKKNDFIEIPSYLKNSSLNYKYETLEKATDYFSTSRKIGQGGAGSVFKGTLPNGKDVAVKRLIFNNRQWVDDFFNEVNLISGMNHKNLVKLLGCSIEGPESLIVYEYLPNKSLDHFIFEKDKTRILKWKQRFEIIVGIAEGLAYLHGGSEIRIIHRDIKSSNVLLDENLNPKIADFGLARCFGADKTHLSTGIAGTLGYMAPEYLIQGQLTDKADVYSFGVLVLETASGRKNNVFREDSGSLLQTIWKLYQSNRLAEAVDPCLGDEFPEREASRVFQIGLLCTQASASLRPSMAQVACMLSNSNLDVPIPKQPPFLNSRLLSQTAPLGFSIDNSSSNTFQKIGVSYSLSQSSSSCSLIRSSKNEETILEA* 667
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0072 666 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 28 653 - -
Vra1g0072 666 ProSiteProfiles Gnk2-homologous domain profile. 149 251 IPR002902 -
Vra1g0072 666 SMART serkin_6 328 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0072 666 Pfam Salt stress response/antifungal 51 138 IPR002902 -
Vra1g0072 666 Pfam Salt stress response/antifungal 169 248 IPR002902 -
Vra1g0072 666 ProSiteProfiles Protein kinase domain profile. 328 612 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0072 666 ProSiteProfiles Gnk2-homologous domain profile. 38 140 IPR002902 -
Vra1g0072 666 ProSitePatterns Serine/Threonine protein kinases active-site signature. 449 461 IPR008271 GO:0004672|GO:0006468
Vra1g0072 666 Gene3D Phosphorylase Kinase; domain 1 289 403 - -
Vra1g0072 666 Gene3D - 40 140 IPR038408 -
Vra1g0072 666 Gene3D - 164 251 IPR038408 -
Vra1g0072 666 SUPERFAMILY Protein kinase-like (PK-like) 314 616 IPR011009 -
Vra1g0072 666 Gene3D Transferase(Phosphotransferase) domain 1 404 603 - -
Vra1g0072 666 CDD STKc_IRAK 334 596 - -
Vra1g0072 666 Pfam Protein tyrosine and serine/threonine kinase 330 593 IPR001245 GO:0004672|GO:0006468
Vra1g0072 666 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 42 28 653 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0072 Vra-Chr1 846951 851318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0072 17 493 Receptor kinase-like Gene Family AT5G40380 52.381 7.39e-175 505
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra1g0072 PK_Tyr_Ser-Thr 1.7e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0072 - - gmx:100819689 1075.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0072 1 846951 851318 Vra1g0072 1 846951 851318 ECH