Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0065 ATGATGGCTTCTTCTTCTAGCTACTCGAATTCTCCATGTGCAGCGTGCAAGTTTCTGAGGAGGAAGTGCATGCCAGACTGCATTTTTGCGCCATATTTTCCTCCAGAGGAGCCTCAGAAGTTTGCAAACGTGCACAAGATCTTTGGTGCAAGCAACGTGAGCAAGATTCTGAACGAGGTGCAACCCTATCAGAGAGAAGATGCTGTAAATTCTTTGGCATATGAGGCAGAAGCAAGGATCAAAGATCCTGTGTATGGTTGTGTTGGTGCCATTTCAGTGCTGCAAAGGCAAGTTCTCAAGCTCCAAAAGGAGCTTGATGCTACAAATGCTGATTTGATCCGCTACAGCACTTGCAGTGAAATGCCAAACAGTAGTAGCAGTAGTGCTCATCATCATGGAGGAAGAAGCAAGATGAGCAGTGATGATGGTGGTGGTGGTGGTGGTGGTTCTGGTTTAAGCTTCTATTATTCTTCTGCTAATTGGAACAATGATCATTCTGAAAATGGCTACCCCAGAGGAGATATATAA 528 0.4489 MMASSSSYSNSPCAACKFLRRKCMPDCIFAPYFPPEEPQKFANVHKIFGASNVSKILNEVQPYQREDAVNSLAYEAEARIKDPVYGCVGAISVLQRQVLKLQKELDATNADLIRYSTCSEMPNSSSSSAHHHGGRSKMSSDDGGGGGGGSGLSFYYSSANWNNDHSENGYPRGDI* 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0065 175 PANTHER LOB DOMAIN-CONTAINING PROTEIN 25 5 136 - -
Vra1g0065 175 Coils Coil 91 111 - -
Vra1g0065 175 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 5 136 - -
Vra1g0065 175 MobiDBLite consensus disorder prediction 120 146 - -
Vra1g0065 175 ProSiteProfiles LOB domain profile. 11 112 IPR004883 -
Vra1g0065 175 Pfam Lateral organ boundaries (LOB) domain 12 108 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0065 Vra-Chr1 791852 793667 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0065 6 118 AS2 family AT3G27650 84.071 7.37e-71 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra1g0065 LOB 2.5e-42 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0065 1 791852 793667 Vra1g0065 1 791852 793667 ECH