Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0053 ATGGAATCTCCCGGTAACGAGCATGTGGTGGGTGCCGCTGACCCCAACGACGTCGTTACACCTTTCTCCCACAGAGAAGAACCCCACAATTCCCAACCCCTCACCGGCGACGGTGCCAGTCCCGGAAAGATATTTATAGGTGGTTTAGCGAGAGAAACGACCATTGCTCAATTCATCAAGCACTTTGGGAAATATGGTGAGATCACGGATTCGGTCATCATGAAGGACCGGAAAACTGGGCAACCTCGTGGATTCGGGTTTATAACGTATGCCGATCCCTCGGTGGTTGATAAAGTCATTGAGGATCCTCACGTCATCAATGGAAAACAAGTTGAGATTAAGCGGACGATACCAAGGGGAGCTGTTGGCTCTAAGGATTTTAGGACAAAGAAAATTTTTGTAGGTGGAATTCCTTCAAATGTGACTGAAGATGAATTCAGAGACTTCTTTACTCGCTATGGTGAAGTAAAAGATCACCAAATAATGCGGGACCACTCCACCAACAGATCTCGTGGATTTGGGTTTATCACATTTGATTCTGAAGAAGCAGTTGATGATCTTCTATCCATGGGGAACAAAATTGAATTTGCTGGAGCTCAGGTGGAAATCAAGAAGGCTGAACCAAAGAAGCCAAACTCTGCACCTCCATCATCCAAGCGCTACAATGACTCAAGATCTTCATACGGTGGTGCTGGATATGGAGATGCCTATGATGGATTTGGTGGCAATTTTGGAGTTGGGGGTGGTTATAGATCAGGTGGTGCTTATGGTGGTGGTAGGGCTGGTGCTTATGGTGCCTATGGAAGTGAATTTGGTGGTTATGGAGGATATGCTGGTGCGATGGGACCGTACAGAGGAGATCCCTCCCTCAGTTATGCTGGTCGATATGGTGGAAGCTTTAGTAGAGGGTATGATCTTGGTGGGTATGGTGGACCTAGTGAGAATTATGGGGCATATGGTGGGGGTGGTGGTTCTTCTGGTGGTGCTGGTGCCGGTGCCTATCAAAGTGGCTATGATGGCAGCCTAGGAGGTGGATATGGAGGGACTAGTGGTGGTCCCTTCTATGGGAGCAGTAGAGGTGGTTATGGTGCTGGCCGATACCATCCTTATGGAAGATAA 1119 0.4808 MESPGNEHVVGAADPNDVVTPFSHREEPHNSQPLTGDGASPGKIFIGGLARETTIAQFIKHFGKYGEITDSVIMKDRKTGQPRGFGFITYADPSVVDKVIEDPHVINGKQVEIKRTIPRGAVGSKDFRTKKIFVGGIPSNVTEDEFRDFFTRYGEVKDHQIMRDHSTNRSRGFGFITFDSEEAVDDLLSMGNKIEFAGAQVEIKKAEPKKPNSAPPSSKRYNDSRSSYGGAGYGDAYDGFGGNFGVGGGYRSGGAYGGGRAGAYGAYGSEFGGYGGYAGAMGPYRGDPSLSYAGRYGGSFSRGYDLGGYGGPSENYGAYGGGGGSSGGAGAGAYQSGYDGSLGGGYGGTSGGPFYGSSRGGYGAGRYHPYGR* 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0053 372 PANTHER NUCLEOTIDE-BINDING ALPHA-BETA PLAIT DOMAIN-CONTAINING PROTEIN-RELATED 1 372 - -
Vra1g0053 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 130 208 IPR000504 GO:0003723
Vra1g0053 372 MobiDBLite consensus disorder prediction 205 226 - -
Vra1g0053 372 SUPERFAMILY RNA-binding domain, RBD 32 120 IPR035979 GO:0003676
Vra1g0053 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 44 110 IPR000504 GO:0003723
Vra1g0053 372 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 132 200 IPR000504 GO:0003723
Vra1g0053 372 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 42 118 IPR000504 GO:0003723
Vra1g0053 372 Gene3D - 42 121 IPR012677 -
Vra1g0053 372 SMART rrm1_1 43 114 IPR000504 GO:0003723
Vra1g0053 372 SMART rrm1_1 131 204 IPR000504 GO:0003723
Vra1g0053 372 Gene3D - 124 237 IPR012677 -
Vra1g0053 372 MobiDBLite consensus disorder prediction 353 372 - -
Vra1g0053 372 SUPERFAMILY RNA-binding domain, RBD 120 218 IPR035979 GO:0003676
Vra1g0053 372 MobiDBLite consensus disorder prediction 1 39 - -
Vra1g0053 372 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 1 372 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0053 Vra-Chr1 651312 655427 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0053 42 198 Eukaryotic Initiation Factors Gene Family AT1G71770 27.168 9.90e-11 61.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0053 K12741 K14314 gmx:100793209 553.518
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0053 1 651312 655427 Vra1g0053 1 651312 655427 ECH