Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0050 ATGGAGTCTCCTGTTAATGGAGTTGATTCCTTATCAGAAGTTCAGAATTCAGTTTCTGAGGTAAATCATGACCCTCTTTCATCTGGGCCTCTCCTGAGAGCATCTAGAAACAATGATGGTGGTCATGAAACTAAGATCATCCACCATCAAAACAGTCATGTAATTAATCAAAAGCATTCCCACGAAGAGGGCAATAACTTGAAGAAAGAAGGGTTGGCAACAAAATTGTCCAGCAAGCAGCCGCCACTTGATGATTCCAAGGGCTGTGAGTCAAATGGTGTGTTAGTGTTAGAATCTGAGAGGAAAGGAACAGTTGACAATAATGCAAAGAGCCACTGTCAGCCAGAGGCTACATTCTGCCAAAGTCCTAAGAATAGTTTCTATTCAGCCACTGTCTACTCAGAAGCCAAAGGAAGTTTCACCAACACTGAAGTCAGTGAATGTGCTAGTGTTGACAAATCACGTGAAAGTGAAGAAGTGGCGAATTCCAGTGATTTTAATGAGAGCAGGAAGACAAGCATATGTAGAGCAAGTACTGGCAGTGATGCTAGTGATGAGAGTAGCACCACTAGTTTGAGCAGTGTTTTGTATAAACCTCACAAGGCAAATGACATAAGATGGGAGGCTATTCAAGCTGTTCGAATCAGAGATGGGATGTTGGAAATGAGGCATTTCAGGTTGTTGAAGAAATTGGGGTGTGGAGACATAGGGAGTGTGTATCTGGCTGAACTGAGTGGCACAAGAACTTCTTTTGCCATGAAAGTCATGAACAAGACCGAGCTGGCAAACCGCAAGAAGCTCTTGAGGGCTCAGACAGAGAGAGAGATATTACAGTCCTTAGATCATCCTTTTCTACCTACATTGTATACACACTTCGAGACAGAAACATTTTCTTGCTTGGTAATGGAGTTCTGCCCTGGTGGGGACCTGCATGCGCTCAGGCAAAGACAACCAGGGAAGTATTTTTCAGAGCATGCAGTCAGGTTTTATGTGGCAGAAGTTCTCCTTGCTTTGGAGTACTTGCACATGCTAGGGATAATCTACAGAGACCTGAAACCAGAGAATGTGTTGGTGAGAGAAGATGGTCACATAATGCTTTCAGACTTTGATCTCTCTCTAAGGTGCACTGTCAGTCCAACTCTAGTGAAGTCATCAAACAACTTGGAGACCAAAAGCTCAGGATACTGCGTTCAGCCTTCCTGCATCGAGCCGACATGCGTGATGCAGCCGGACTGCATCCGGCCGTCGTGCTTCACACCGCGTTTCCTATCCAGAAAATCCAAGAAAGACAAAAAGTCTAAACCAAAGAATGATGTGCACAACCAGGTGACCCCTCTTCCTGAGCTAATTGCAGAGCCAACAAATGCAAGATCAATGTCCTTTGTTGGAACACACGAGTACTTGGCCCCAGAGATCATCAAGGGTGAAGGGCATGGAAGTGCTGTGGATTGGTGGACATTTGGGATATTCCTGTATGAGCTTCTGTTTGGTAGAACACCATTCAAAGGTTCAGAAAACCGTGCAACTCTGTTCAATGTAATTGGTCATCCTCTAAGGTTTCCAGAATCTCCAACTGTTAGCTTTGCTGCCAGAGATTTGATCAGAGGGTTGCTTGTGAAGGAGCCTCAGCATCGTCTCGCCTATAGACGTGGCGCCACAGAGATCAAACAACATCCATTCTTTCAGAATGTTAACTGGGCACTCATCCGTTGTGCAAATCCTCCAGAGGTGCCAAGGCAGGTTATGAATCTTCCTCAAACGGAAAAGGACCTTGGTGTGAAGCCTTCTGGTAATTATTTAGATATTGATTTCTTCTGA 1818 0.4472 MESPVNGVDSLSEVQNSVSEVNHDPLSSGPLLRASRNNDGGHETKIIHHQNSHVINQKHSHEEGNNLKKEGLATKLSSKQPPLDDSKGCESNGVLVLESERKGTVDNNAKSHCQPEATFCQSPKNSFYSATVYSEAKGSFTNTEVSECASVDKSRESEEVANSSDFNESRKTSICRASTGSDASDESSTTSLSSVLYKPHKANDIRWEAIQAVRIRDGMLEMRHFRLLKKLGCGDIGSVYLAELSGTRTSFAMKVMNKTELANRKKLLRAQTEREILQSLDHPFLPTLYTHFETETFSCLVMEFCPGGDLHALRQRQPGKYFSEHAVRFYVAEVLLALEYLHMLGIIYRDLKPENVLVREDGHIMLSDFDLSLRCTVSPTLVKSSNNLETKSSGYCVQPSCIEPTCVMQPDCIRPSCFTPRFLSRKSKKDKKSKPKNDVHNQVTPLPELIAEPTNARSMSFVGTHEYLAPEIIKGEGHGSAVDWWTFGIFLYELLFGRTPFKGSENRATLFNVIGHPLRFPESPTVSFAARDLIRGLLVKEPQHRLAYRRGATEIKQHPFFQNVNWALIRCANPPEVPRQVMNLPQTEKDLGVKPSGNYLDIDFF* 606
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0050 605 SUPERFAMILY Protein kinase-like (PK-like) 200 583 IPR011009 -
Vra1g0050 605 PANTHER SERINE/THREONINE-PROTEIN KINASE D6PKL3 65 605 - -
Vra1g0050 605 Gene3D Transferase(Phosphotransferase) domain 1 455 579 - -
Vra1g0050 605 Pfam Protein kinase domain 458 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0050 605 Pfam Protein kinase domain 226 379 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0050 605 CDD STKc_phototropin_like 223 579 - -
Vra1g0050 605 Gene3D Transferase(Phosphotransferase) domain 1 309 378 - -
Vra1g0050 605 Gene3D Phosphorylase Kinase; domain 1 223 308 - -
Vra1g0050 605 PANTHER FLIPPASE KINASE 1-RELATED 65 605 - -
Vra1g0050 605 SMART serkin_6 225 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0050 605 ProSiteProfiles Protein kinase domain profile. 225 561 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0050 605 MobiDBLite consensus disorder prediction 1 24 - -
Vra1g0050 605 ProSitePatterns Serine/Threonine protein kinases active-site signature. 346 358 IPR008271 GO:0004672|GO:0006468
Vra1g0050 605 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0050 Vra-Chr1 627705 631662 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0050 133 605 AGC Kinase Gene Family AT5G47750 71.138 0.0 708
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Vra1g0050 Pkinase 8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0050 K08286 - gmx:100810909 1028.08