Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0048 ATGGAAAAAGAGGTTGTGGAAAGTCTTTGGAATGGTCATGTTGAATCTCAAATTCAAGCAGCTTTGGAGCTTTGCAGATTAAGCAGTAAGCAGAGGCACAAGTTGGAAGAAAGTAGAGTCATGGTTCCTCTTATTTCCATGCTTCATTCTGAAAACTATGAAGCAGTAGAAGCTGCTCTTTGTGCTTTGCTCAGTCTTTCCTTTGGCTCTGAGAGAAACAAGATTCGGATCATCAAATATGGAAGTTTGCCAGTTCTGCTGAGTCTCCTCCATTGTGATAGCCAGAGAGCAGCAGACTTGACTTTGGCAGCCATGCTTACTCTCTCTTCTTGCAAAGCAAATAAGGTAGCAATTGCTTCTTCTGGGGCTGTTCAACTCTTGGTTGGGTTTGTAAACAACAGCGATTATAGCACTCAGTCTCAGCTTGATGCTATTGCTACTCTGCAGAATCTTACAACGTGCAAAGAGATTGTTCCACTGATTGTGTCTTCTGGGGTTATGCTGTCCTTGCTTGAACTGATCCACACCTCAGTAAAATCATCTCCATTGGTTGAGAAAGCAATTGGGTTGCTAGAAAACCTTGTGTCTTCATCAGAGAGTGCATTATGTGAGGCTGCTAGTACTATTGGAGCAATCAGGATACTGGTTGAGACTATTGAAGATGGATCTTCACTGAGCAAAGAGTATGCAGTGTGTATACTTCTCCTTGTATGCCAGAGCTGCAGAGAGAAATATAGAGGGTTGATTTTGACAGAGGGAGTGATGCCAGGGTTGCTTCAGTTGAGTGTGGATGGAACATGGAGAGCCAAATCCATGGCTCGAGAACTGTTGTTGCTTCTGAGGGACTGCTCCAATTATAGCTCAAGATGTACACAGATTGATCATGAGCTTATAGAAAGGATAATGGATGAAATTGAAGCAGAAGGAGAGGAATTGGCAGATACTACTTTGAGGCTGGTAGAGGAGATGATTGCAAAGCTCCATGCTTAA 990 0.4303 MEKEVVESLWNGHVESQIQAALELCRLSSKQRHKLEESRVMVPLISMLHSENYEAVEAALCALLSLSFGSERNKIRIIKYGSLPVLLSLLHCDSQRAADLTLAAMLTLSSCKANKVAIASSGAVQLLVGFVNNSDYSTQSQLDAIATLQNLTTCKEIVPLIVSSGVMLSLLELIHTSVKSSPLVEKAIGLLENLVSSSESALCEAASTIGAIRILVETIEDGSSLSKEYAVCILLLVCQSCREKYRGLILTEGVMPGLLQLSVDGTWRAKSMARELLLLLRDCSNYSSRCTQIDHELIERIMDEIEAEGEELADTTLRLVEEMIAKLHA* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0048 329 Gene3D - 3 204 IPR011989 -
Vra1g0048 329 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 165 200 IPR000225 GO:0005515
Vra1g0048 329 SUPERFAMILY ARM repeat 4 311 IPR016024 -
Vra1g0048 329 SMART arm_5 111 153 IPR000225 GO:0005515
Vra1g0048 329 SMART arm_5 154 196 IPR000225 GO:0005515
Vra1g0048 329 SMART arm_5 28 68 IPR000225 GO:0005515
Vra1g0048 329 SMART arm_5 70 110 IPR000225 GO:0005515
Vra1g0048 329 Gene3D - 205 313 IPR011989 -
Vra1g0048 329 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 122 166 IPR000225 GO:0005515
Vra1g0048 329 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 1 309 - -
Vra1g0048 329 PANTHER U BOX DOMAIN-CONTAINING 1 309 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0048 Vra-Chr1 620197 622457 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0048 4 282 U-box Gene Family AT3G54790 33.566 2.04e-28 114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0048 - - gmx:100778534 514.227
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0048 1 620197 622457 Vra1g0048 1 620197 622457 ECH