Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0047 ATGATTCTATATGCAGCCATAATAGCATCATTCTTGAGCTCCCTATACTTGTTCCATCGCAGAAGATCTTGCAAACACCCCCTCTTGTTTGATTACCCCATCCTTGGCATGTTACCAACCTTGCTCTTCAACTTGTGGCGCCTTCATGATTTCATCACTGAGATACTAACAAAACATGGTGGCACCGGGGAGTTCATGGGGCCATGGTTCACCAAAATGAACTATTTGGTCACTTGTGACTCTCTCAACGTGCAACACATGCTGTGCAAGCGCTTCGACAACTATGTCAAAGGACATGACTTTCGTGACATATTCGAACCATTCGGAGATGGGTTTGGTGCTGCTGACGATGAGACATGGAAGTACATCAGAAACCTTCTCCGTTCTCAGATGAAACAACCAAGGCTCAAAGCATTTGTTGATCAAACCGTTCAGAAGAAGATCCTTACAAGCCTGCTTCCAATATTGGATCATGCACAACAACAAGGGAGGGTTGTGGATATTCAAGATGTCCTCGTGCGATTCACCTCTGATAACATATGCTTGACAACTGTAGGACACGATCCTAAGAGTCTTTCTGTCGACTTCCCCGAAGTTGCAATTGAGATGGCTTTTAGAGAGACTGAAAAGTCGATATTTTATAGACATACGGTGCCAAAAACTATATGGAAACTCCAAAAGCGGCTCCAAATTGGTCAAGAGAAGAAGATGAGAGAAGCATATAAAACATTTGATGAGTTCATATATGCACTGATAGCGTCCAAGCGAGAAGAGTTAAGTAAGTGCACAAAAGAAGAAATCAGTGAAGCTCCATTTAACTTGCTAACTGTTTGGATGACAGAAGATGAAGGACTACGTGAGCATGATGATAAGTTCGTAAGGGATTCTGCATTTAATTTTCTTGTAGCGGGTAGGGGAGCCATGGCTTCGACTCTTACATGGTTCCTTTGGCTTGTTTCGAAACACCCTTTAGTGGAAGCCAAGATTCTTGAAGAGATCAGAGATAATTTTAAAACAAATGAAAAGAAAAATGATGACTGTGGTGATCATTGTTTTGATGAGGACCACCATAATGATAATCTTGATCAAGAACAGTATCTGAAGCAATCTGCATCTGGGGAAGCTTTAGGCATGGAAGAGGTGACAAAGCTGGTTTATCTTCATGGTGCATTGTGTGAAGAGATATGGGGAAAAGATTGTTTGGAGTTCAAGCCAGAGAGATGGATATCTGATAGGGGAGAAATTGTTTATGCACCAGCTTACAAATTCATTGCTTTTAATGCAGGACCAAGAATCTGTTTAGGAAAAGACTTGGCCTTTGTTCAAATGAAGATGGTGGCAGCTGCTATACTGAGCAAGTACTGTTTCAAAGTGGTGGAAGGTCATGTTCCAACTCCAACACATTCCATTGTTCTTCTGATGAAGAACGGTTTGAAGGCTAGGATAATGAAAAGAGAAGTTTGA 1464 0.416 MILYAAIIASFLSSLYLFHRRRSCKHPLLFDYPILGMLPTLLFNLWRLHDFITEILTKHGGTGEFMGPWFTKMNYLVTCDSLNVQHMLCKRFDNYVKGHDFRDIFEPFGDGFGAADDETWKYIRNLLRSQMKQPRLKAFVDQTVQKKILTSLLPILDHAQQQGRVVDIQDVLVRFTSDNICLTTVGHDPKSLSVDFPEVAIEMAFRETEKSIFYRHTVPKTIWKLQKRLQIGQEKKMREAYKTFDEFIYALIASKREELSKCTKEEISEAPFNLLTVWMTEDEGLREHDDKFVRDSAFNFLVAGRGAMASTLTWFLWLVSKHPLVEAKILEEIRDNFKTNEKKNDDCGDHCFDEDHHNDNLDQEQYLKQSASGEALGMEEVTKLVYLHGALCEEIWGKDCLEFKPERWISDRGEIVYAPAYKFIAFNAGPRICLGKDLAFVQMKMVAAAILSKYCFKVVEGHVPTPTHSIVLLMKNGLKARIMKREV* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0047 487 Gene3D Cytochrome P450 391 487 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0047 487 Gene3D Cytochrome P450 11 390 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0047 487 PANTHER CYTOCHROME P450 392 485 - -
Vra1g0047 487 PANTHER CYTOCHROME P450 6 394 - -
Vra1g0047 487 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 426 435 IPR017972 GO:0005506|GO:0016705
Vra1g0047 487 PANTHER CYTOCHROME P450 FAMILY PROTEIN 6 394 - -
Vra1g0047 487 PANTHER CYTOCHROME P450 FAMILY PROTEIN 392 485 - -
Vra1g0047 487 SUPERFAMILY Cytochrome P450 16 485 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0047 487 Pfam Cytochrome P450 47 339 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0047 487 Pfam Cytochrome P450 393 474 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0047 487 PRINTS E-class P450 group I signature 312 338 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0047 487 PRINTS E-class P450 group I signature 423 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0047 487 PRINTS E-class P450 group I signature 433 456 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0047 Vra-Chr1 602172 611050 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0047 31 485 Cytochrome P450 AT4G39490 38.171 6.87e-115 347
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0047 - - var:108344605 754.592