Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0046 ATGAACAAACACTTTCTCGTTTTCGATATGGCCATGTTTCTTCTCTTTGCAGCCATATTAGCGTCATTCCTCTGCTCCCTATACTTCTTCCATCGCAGAACACGATGCATAAACCCCCTCTTGAGAGATTACTTCATCCTCGGTATGCTACCGCCGGTGCTCTTCAACCTCTGGAGGATCCATGATTTTATCACTGAGATTCTGAAACTTCGTGGTGGCACTGGGGAGTTCAAAGGGCCATGGTTCACCAAAATGAACTATTTGATCACTTGTGACTCCCTCAACGTGCAACACATGCTGTGCAAGACCAAGAATCTGTTTGGGGAAAGACTTGGCCTTTGTTCAAATGAAGATGGTGGCTGCTGCTATTCTGAGGAAGTACTGTTTCAAAGTGTTGGAAGGTCATGTTCCAACTCCAACACATTCCATTGTTCTTCTCATGAAGAACGAATTGCTCATAAAACATGGAGGCTCTGGGTACTTCAAAGGACCGTGGTTCACCGAAATGAACTATTTTGTCACTTGTGCTCCCTCAACGTCCAACACACGTTGTGCAAGAACTTCGACAACTATGTCAAGGGACATGACTTTCGTGACATTTTCGAACCATTTGGAGATGGGTTTGTCACTGCCGATTATGAGACATGGAAGTACATCAGAACCCTTCTCCATTCTCTGATGAAACAACCAAGACTCAAAGCTTTTGTTGATCAAACCGTTCAGAAGAAGATACTTACAAGCCTGCTTCCAATATTGGATCATGCACAACAACTAGGGAGGGTGGTGGATCTTCAAGATGTCCTCTTGCGATTCACTTTTGATAACATATTCTTAACAACCGTGGGACACGATCCTAAGTGTCTTTCTATTGACTTCCCCGTAGTTGCAGTTGGGAAGGCTTTTAGAGTGTCTGAAAAGTCTATATTTTATAGACACACGGTGCCAAAGACTGTATGGAAATTCCAAAGGTGGCTTCAAATTGGTCAGGAGAAGAAGATGACAGAAGCATGTAGAACAATTGATGAGTTCATATATTCATTCATAGAGTCCAAGCGAGAAGAGTTAGGCAAGTGCACAGAAGACGAAATGAATGAAGCTCCATCTGACTTGCTAACTGCTTTGATGACAGAACATGGAGGACGAGAGCATGATGATAAGTTCGTAAGGGATTTTGCATTTAACTTTCTTGTAGCGGGAAGGGGATCCATGGCTTCGGCTCTTACCTGGTTCTTTTGGCTTCTTATCAAACACCCTATAGTTGAAGCCAAGATTCTTGAAGAGATCAGAGATAATTTTAAGGCAAATGAAAAGAAAAATGATGACTGTGGTCATGGTTTTGATGAGGAGTATCATAATCTTCATGATCAGGAACAGTATCTGAAGGTATCTGGGAAAGTTTTAGGCATGGAAGAGGTGAAAAAGCTGGTTTATCTGCATGCTGCATTGTGTGAATCTCTGAGACTTTTCCCTCCATTACCTATTCAACGGAAGCAAGCAGTTAAAGCTGACACTCTTCCAAGTGGGCATAGAGTAAATGCCAATACAATGATTATGCTTTCTTTTTATGCAATGGGAAGGTGTGAAGAGATATGGGGAAAAGATTGTTTGGAGTTCAAGCCAGAGAGATGGATATCTGAGAAAGGAGAAATTGTTAATGTAGCATCATACAAATTCATTGCTTTTAATGCAGGACCAAGAACTTGTTTGGGAAAGGAGTCGTCTTTGCTTCAAATGAAGATGCTGACAGCTGCTATGTTCTGGAAATATCGTTTTCAAGTGGTGGAAGGTCATGTTGTCAGTCCAAGCCGTTCATTTGGGCTTTCCATGAAGAACGGGTTGAAGGTTAGGATAATGAAAAGAGAACTTTGTCAATCCTATAATAGCAGGAAATCTAAACAAAGAAAAAAGAAAGGTGACAAAAACATTTATAAGGTGGCTGCTGCTATTTTAAGGAAGTACTGTTTCAAAGTGGTGGAAGGTCATGTTGCAACTCCAACACATTCCATTGTTCTTCTGATGAAGAACGGTTTGAAGGCTAGGATAATGAAAAGAGATGTTTGA 2061 0.4139 MNKHFLVFDMAMFLLFAAILASFLCSLYFFHRRTRCINPLLRDYFILGMLPPVLFNLWRIHDFITEILKLRGGTGEFKGPWFTKMNYLITCDSLNVQHMLCKTKNLFGERLGLCSNEDGGCCYSEEVLFQSVGRSCSNSNTFHCSSHEERIAHKTWRLWVLQRTVVHRNELFCHLCSLNVQHTLCKNFDNYVKGHDFRDIFEPFGDGFVTADYETWKYIRTLLHSLMKQPRLKAFVDQTVQKKILTSLLPILDHAQQLGRVVDLQDVLLRFTFDNIFLTTVGHDPKCLSIDFPVVAVGKAFRVSEKSIFYRHTVPKTVWKFQRWLQIGQEKKMTEACRTIDEFIYSFIESKREELGKCTEDEMNEAPSDLLTALMTEHGGREHDDKFVRDFAFNFLVAGRGSMASALTWFFWLLIKHPIVEAKILEEIRDNFKANEKKNDDCGHGFDEEYHNLHDQEQYLKVSGKVLGMEEVKKLVYLHAALCESLRLFPPLPIQRKQAVKADTLPSGHRVNANTMIMLSFYAMGRCEEIWGKDCLEFKPERWISEKGEIVNVASYKFIAFNAGPRTCLGKESSLLQMKMLTAAMFWKYRFQVVEGHVVSPSRSFGLSMKNGLKVRIMKRELCQSYNSRKSKQRKKKGDKNIYKVAAAILRKYCFKVVEGHVATPTHSIVLLMKNGLKARIMKRDV* 687
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0046 686 PRINTS E-class P450 group I signature 407 433 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0046 686 PRINTS E-class P450 group I signature 479 497 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0046 686 PRINTS E-class P450 group I signature 558 568 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0046 686 PRINTS E-class P450 group I signature 568 591 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0046 686 PANTHER CYTOCHROME P450 FAMILY PROTEIN 177 620 - -
Vra1g0046 686 PANTHER CYTOCHROME P450 FAMILY PROTEIN 18 105 - -
Vra1g0046 686 PANTHER CYTOCHROME P450 FAMILY PROTEIN 643 684 - -
Vra1g0046 686 Pfam Cytochrome P450 180 604 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0046 686 SUPERFAMILY Cytochrome P450 179 620 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0046 686 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 561 570 IPR017972 GO:0005506|GO:0016705
Vra1g0046 686 Gene3D Cytochrome P450 137 624 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0046 686 PANTHER CYTOCHROME P450 18 105 - -
Vra1g0046 686 PANTHER CYTOCHROME P450 177 620 - -
Vra1g0046 686 PANTHER CYTOCHROME P450 643 684 - -
Vra1g0046 686 PRINTS P450 superfamily signature 398 415 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0046 686 PRINTS P450 superfamily signature 480 491 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0046 686 PRINTS P450 superfamily signature 559 568 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0046 686 PRINTS P450 superfamily signature 568 579 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0046 Vra-Chr1 587422 595364 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0046 179 620 Cytochrome P450 AT4G39490 43.177 1.05e-129 392
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0046 - - vra:106752766 1375.15