Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0040 ATGGCTTTCTTATTGGTTGGCTATGCAGGAGCAGCTACAATTGCAGCACTCCTCTGCATGTTACGCTTCTTCTATCTCAGACGATGTTGCTCGAACCCCATCTTCACCGAATACCCTTTTGTCGGCATGCTACCACATGTTCTTTGCAATTTGTGGCATGCCCATGATTATTCAACTCAGGTTTTGAAACAACATGGCGGCACTGGTGAGTTCGTTGGACCATGGTTTACCGGTATGAACTACATGCTCACCTGTGATCCCCTCAACGTGCACCATATGTTGAGCAAAAATTTCCGTAACTACGTCAAGGGACCCGAGTTTCGGGAGATTTTTCAAGCTTTCGGAGATGGCATTTTCACTGCTGATGCAGAAGCTTGGAAATACAGCAGAGATCTCTTCCATTCTTTGCTCAAGCATAAAAGCTTCGAAGTGTTTCTGGAGAAAACTATTCAGAAGAAGGTGCAGAATAGCCTACTTCCTTTATTGAATCACGTGCAAGACCAAGGGAGGGTGGTGGATCTTCAAGATGTCTTCAATCGCTTCACTTTCGATAACATATGTTCTACAGTTCTTGGTCGTGACCCCGAATGCCTTTCCATTGATTTTCCAGAAGTTGCAATCGAGAAGGCTTTTAACCAAGCAGAAGAGTCCATATTCTACAGACACGTAGTGCCGGGAAGTGTCTGGAAGCTCCAGAAATGGCTCCAAATTGGTCAAGAGAAGAAGATGACAGAATCATGCATAATACTTGATGAGTTCATATATTCATGCATAGCGTCCAAGAGAGAAGATCTAAGCAGGTATGAGGAAAATGAAACGGGAGAAACTTTTCATGTTGACTTGTTAACAACTTTGATGAGAGAAGGAAAGGGAAAAGGAGAAGCACATGAAGATATATTTCTAAGAGATGCTGTGTTCAATCTTTTTGTGGCTGGGAGAGATACCATAACTTCAGCTCTCACGTGGTTCTTCTGGCTTGTTGCTACAAACCCTTTGGTGGAAGCGAAGATTGTTGAAGAGATGAATGAAAAGTTTGGAAGCAATGAAAAGACAGTATTAAGTGCAGAGGAGGTGAAAAAGCTGGTTTATCTGCATGGTGCTATGTGTGAAACGTTGAGGCTGTTTCCTCCTATACCATTCGAACGCAAGAAAGCAATTGAAGCTGACGTGCTTCCTAGTGGGCATGGTGTTAATCCGAGAACAAAGATATTACTATTTTTGTATGCAATGGGAAGAGTTGAAGAAATATGGGGAGAAGATTGCATGGAGATGAAGCCAGAGAGATGGATCTCAGAGAAAGGAGGTATTGTTCATGTACCATCTTACAAATTCATTGCTTTCAATGCAGGACCTCGAAATTGCTTGGGGAAAGACTTGTCCTTTATCCAATTGAAGATGGTGGCAGCAGCTATTTTGCGCAGTTACCATGTTCAACTGGTGGAGGGTTATGTTGCAACTCCTACACTCTCCATTGTTCTTCTTATGAAGGATGGTTTGAAGGTAAATATAACGAAAAGAAAGTCTTAG 1527 0.425 MAFLLVGYAGAATIAALLCMLRFFYLRRCCSNPIFTEYPFVGMLPHVLCNLWHAHDYSTQVLKQHGGTGEFVGPWFTGMNYMLTCDPLNVHHMLSKNFRNYVKGPEFREIFQAFGDGIFTADAEAWKYSRDLFHSLLKHKSFEVFLEKTIQKKVQNSLLPLLNHVQDQGRVVDLQDVFNRFTFDNICSTVLGRDPECLSIDFPEVAIEKAFNQAEESIFYRHVVPGSVWKLQKWLQIGQEKKMTESCIILDEFIYSCIASKREDLSRYEENETGETFHVDLLTTLMREGKGKGEAHEDIFLRDAVFNLFVAGRDTITSALTWFFWLVATNPLVEAKIVEEMNEKFGSNEKTVLSAEEVKKLVYLHGAMCETLRLFPPIPFERKKAIEADVLPSGHGVNPRTKILLFLYAMGRVEEIWGEDCMEMKPERWISEKGGIVHVPSYKFIAFNAGPRNCLGKDLSFIQLKMVAAAILRSYHVQLVEGYVATPTLSIVLLMKDGLKVNITKRKS* 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0040 508 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 447 456 IPR017972 GO:0005506|GO:0016705
Vra1g0040 508 PANTHER CYTOCHROME P450 FAMILY PROTEIN 12 506 - -
Vra1g0040 508 Pfam Cytochrome P450 39 489 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0040 508 PANTHER CYTOCHROME P450 12 506 - -
Vra1g0040 508 PRINTS E-class P450 group I signature 300 317 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0040 508 PRINTS E-class P450 group I signature 320 346 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0040 508 PRINTS E-class P450 group I signature 444 454 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0040 508 PRINTS E-class P450 group I signature 454 477 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0040 508 SUPERFAMILY Cytochrome P450 37 506 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0040 508 PRINTS P450 superfamily signature 311 328 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0040 508 PRINTS P450 superfamily signature 366 377 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0040 508 PRINTS P450 superfamily signature 445 454 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0040 508 PRINTS P450 superfamily signature 454 465 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vra1g0040 508 Gene3D Cytochrome P450 27 508 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0040 Vra-Chr1 515955 517692 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0040 23 508 Cytochrome P450 AT2G23180 44.646 2.69e-160 463
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0040 - - gmx:100792360 800.431