Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0035 ATGAAGAACTGTGAAACATATCGTGAATGTCCCAAATGTCATTATCATACTAATAACAGTGATGTTTCTGATGAGTGGTCTGGTTTTCCTGTTGGTGTAAAGTTTGATCCTTCTGATGTTGAGCTTTTAAAGCATTTGGAAGCAAAGTGTTGTGTTGGAAAGAGAGAGCAACACATGTTTATTCATAAGTTCATCCCAACTTTAGAAGGGGAACAAGGGATTTGCTACACTCATCCAGAAAATCTCCCAGGTGCTAGGAAAGATGGGAATAGTGTCCATTTCTTTCACAAAACAGTTAATGCATATGCTACTGGGCGAAGGAAGCGTAGGAAGATTCATCATCAAGATGGTTTGAGTGAGGAGCATGTTCGCTGGCACAAGACTGGTAGGACCAAATCTGTGATAGAAGATGGAGTTCATAAGGGCTTTAAGAAGATCATGGTCCTTTATGTAAGACCTAAGGAAGGGTCCAAGCCATATAAAACCAATTGGGTGATGCATCAGTACCATCTGGGGAGTGAAGAAGAGGAGAAGAATGGTGAATATGTGGTTTCAAAAATATTTTATCAACAACAGAAGCACTCTGAGAAGAATGAGGAGAATACAGTAGTTGAAGATTCTAACATCGCAGCACAAACAGGTCCAAGTACCCCAAAACCAAATCCCCCTACTCGACCTTGCACAGGCAAATGTGATGACAATTTTGATGAAAATGAGCTTCTGTCATTCATCCAGGATGCCAAGCCTATACCTGGAGAACTACTTGCCCCACCATCTGATGTTCTGGATGAGGATATTAAGGTTGACCCTGCATGGTTGGCTGGTGAATCACATGCTGATTGTGACTTTCATGGCTTGGAGGAAATCTTTTCAATGTCAGATTCATCTGCACTTTTTAATCATTCTGGATTGGCCTCCACTTTGGATAACACTGCAAACAACATGGTTGCACCTGGAAACAATGATGATTATGCATCTTCTGGAGTTTCTGTGCTAGACACCCTGGAGTTAGATACTCCTTCAGATTTTGATCTTTGTAATTTGCAATTTGGCTCTCAAGACAGCACCCTTCACTGGATGGACAAGCTATAA 1092 0.413 MKNCETYRECPKCHYHTNNSDVSDEWSGFPVGVKFDPSDVELLKHLEAKCCVGKREQHMFIHKFIPTLEGEQGICYTHPENLPGARKDGNSVHFFHKTVNAYATGRRKRRKIHHQDGLSEEHVRWHKTGRTKSVIEDGVHKGFKKIMVLYVRPKEGSKPYKTNWVMHQYHLGSEEEEKNGEYVVSKIFYQQQKHSEKNEENTVVEDSNIAAQTGPSTPKPNPPTRPCTGKCDDNFDENELLSFIQDAKPIPGELLAPPSDVLDEDIKVDPAWLAGESHADCDFHGLEEIFSMSDSSALFNHSGLASTLDNTANNMVAPGNNDDYASSGVSVLDTLELDTPSDFDLCNLQFGSQDSTLHWMDKL* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0035 363 Gene3D NAC domain 38 195 IPR036093 GO:0003677|GO:0006355
Vra1g0035 363 MobiDBLite consensus disorder prediction 209 231 - -
Vra1g0035 363 SUPERFAMILY NAC domain 14 190 IPR036093 GO:0003677|GO:0006355
Vra1g0035 363 Pfam No apical meristem (NAM) protein 30 171 IPR003441 GO:0003677|GO:0006355
Vra1g0035 363 PANTHER NAC DOMAIN CONTAINING PROTEIN 44-RELATED 2 361 - -
Vra1g0035 363 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 2 361 IPR044799 GO:0003700
Vra1g0035 363 ProSiteProfiles NAC domain profile. 29 190 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0035 Vra-Chr1 470571 475068 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0035 10 192 NAC Transcription Factor Family AT1G28470 55.851 3.35e-64 205
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vra1g0035 NAM 1.4e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0035 - - pvu:PHAVU_004G004900g 675.241