Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0034 ATGGGATCTGGCAACGAGGTTCACTCAATTGAGGAGTTCAATTTGGAATCAAAGTGGCTTGTAGATCCCAAACAACTATTTGTTGGTCCAAAAATTGGAGAGGGTGCTCATGCCAAAGTATATGAAGGAAAATATAAAAATCACAACGTTGCTGTTAAGATCATCAACAAGGGAGAAACCCCAGAAGAGATTTCAAGGAGACAGGCTCGGTTTGCCAGAGAGGTTGCCATGCTGTCGAGAGTTCAACACAAAAATCTGGTTAAGTTTATTGGGGCTTGCAAAGAACCAGTTATGGTTATAGTGACTGAACTTCTATCAGGTGGAACATTGCGCAAATATCTCTTGAATATGAGGCCAAAGTGCTTGGATATGCCGGTGGCTGTTGGATTTGCTCTTGACATTGCCCGAGCAATGGAGTGTTTACACTCCCATGGGATCATTCATCGTGATCTTAAACCTGATAACTTGATCTTGACAGCTGATCATAAGACAGTTAAACTTGCTGATTTTGGTCTAGCCAGAGAAGAATCCTTAACAGAGATGATGACTGCTGAAACAGGAACATATCGTTGGATGGCTCCTGAACTTTACAGCACTGTTACTCTAAGACAAGGTGAGAAGAAGCATTACAACAACAAGGTGGATGCCTACAGCTTTGCAATTGTGTTGTGGGAACTCATCCATAATAAGCTGCCCTTTGAAGGCATGTCTAATCTACAGGCTGCATATGCAGCTGCTTTTAAGAATACAAGGCCAAGTGCTGAAGACCTTCCTGAGGATTTGGCTCTGATTGTAACTTCATGTTGGAAGGAAGATCCAAGTGATAGACCAAATTTCAGTGAGATCATACAGATGCTCCTTCGATATCTCTCCACCATTTCACCACCAGAGCCTGTTCTTCATCTGCGGATGACTTCATCTGATAATGTGGTGTTGCCACCAGAATCTCCTGGTACAAGTGCATTAATGCTTGGAAGAGATGATTCTGGAGAAACCTCAACAGACAAAGCTGAAGACAGGCCTAAAGGGTTTTTCTTCTGCTTCAACCAGTGTTACTGA 1059 0.4278 MGSGNEVHSIEEFNLESKWLVDPKQLFVGPKIGEGAHAKVYEGKYKNHNVAVKIINKGETPEEISRRQARFAREVAMLSRVQHKNLVKFIGACKEPVMVIVTELLSGGTLRKYLLNMRPKCLDMPVAVGFALDIARAMECLHSHGIIHRDLKPDNLILTADHKTVKLADFGLAREESLTEMMTAETGTYRWMAPELYSTVTLRQGEKKHYNNKVDAYSFAIVLWELIHNKLPFEGMSNLQAAYAAAFKNTRPSAEDLPEDLALIVTSCWKEDPSDRPNFSEIIQMLLRYLSTISPPEPVLHLRMTSSDNVVLPPESPGTSALMLGRDDSGETSTDKAEDRPKGFFFCFNQCY* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0034 352 SUPERFAMILY Protein kinase-like (PK-like) 17 313 IPR011009 -
Vra1g0034 352 PANTHER SERINE-THREONINE PROTEIN KINASE 1 329 - -
Vra1g0034 352 Gene3D Transferase(Phosphotransferase) domain 1 106 302 - -
Vra1g0034 352 CDD STKc_MAP3K-like 32 286 - -
Vra1g0034 352 Gene3D Phosphorylase Kinase; domain 1 13 105 - -
Vra1g0034 352 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
Vra1g0034 352 MobiDBLite consensus disorder prediction 315 337 - -
Vra1g0034 352 Pfam Protein tyrosine and serine/threonine kinase 29 286 IPR001245 GO:0004672|GO:0006468
Vra1g0034 352 SMART serkin_6 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra1g0034 352 ProSitePatterns Protein kinases ATP-binding region signature. 32 53 IPR017441 GO:0005524
Vra1g0034 352 PRINTS Tyrosine kinase catalytic domain signature 102 115 IPR001245 GO:0004672|GO:0006468
Vra1g0034 352 PRINTS Tyrosine kinase catalytic domain signature 140 158 IPR001245 GO:0004672|GO:0006468
Vra1g0034 352 PRINTS Tyrosine kinase catalytic domain signature 214 236 IPR001245 GO:0004672|GO:0006468
Vra1g0034 352 PRINTS Tyrosine kinase catalytic domain signature 257 279 IPR001245 GO:0004672|GO:0006468
Vra1g0034 352 PANTHER PROTEIN KINASE ATN1 1 329 - -
Vra1g0034 352 ProSiteProfiles Protein kinase domain profile. 26 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0034 Vra-Chr1 465151 468404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0034 9 352 MAP Kinase Kinase Kinase AT5G50180 77.326 0.0 569
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Vra1g0034 PK_Tyr_Ser-Thr 2.9e-58 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0034 - - gmx:100792887 647.891
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g1379 4 20505829 20507305 Vra1g0034 1 465151 468404 PCT