Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0030 ATGTCCTCAACGAGGTTCGGATTCTTCTTTTGCCATTGTCAAAGGCTCTTCCCAGCACTATCTTCTTCTTCTTCCTTTGCTTTTTCACGCCCAAGACTCCTCTCTACCACTCCATATCCTCTCCAATATGAACTCATTATCAACCGTCCATCTTACCCTCGCCCACCAACTGTTCGACCAATTGACTCACCCGAACCTGAAGACCCCGCTTCCGAGACTCGCCCCCAACTAGACAAGGCCCAGAGGAAGTACTATAACAAGCGCAGGAAAAGGATATACGGCTCGGATTCCGACCAAGAGGCAGCTGGGCGCCGTGACGAAGGGTTCGTGGAGTTGAAGCCTGAGGTGGTGGAATTCCCCACGCTGCACAAGAGGGAGGAAGAGTTGTACTTCCACGACGCGTTTACGTATCCCTGGGAGAAGGACAAGCATTACAAGATGGTTTATCAGTTGGAGAAGAAGTACTTTCCTGATCAGTCGCTTGACAAGGCCTTTCTCCAACCGGGACAGTCAAATATCAATAGTGCAAATGTTGATGTTAATGCAGATGGACGGGGCAAGGGTAGGAAGAAAGATGTTGGGATGGATGAAAAGTTGGTGTTTTTTGAGGGAAAAGAGAAGGGCGAGGGTGAGAGTGGAAGTAGAGAACTGAAGGAGAAGAAGGTTGAGGAGTTCTTCAAGGGTTTGAAGAAGGTTCCTGGTAGTAACAAGGACGTTCAGGTTGGAGAGCCTTTTCTTTCGTCAAGGAGGACTGGTCTTCCTCCCGTGTGGGATAGTCCGCATGGCACTGTGGTTTTGGTTAACAAACCGAAAGGTTGGACTTCATTCACGGTTTGTGGAAAGCTGCGTCGCCTTGTCAAAGTGAAAAAGGTCGGTCATGCTGGGACCCTTGACCCAATGGCTACTGGTTTATTGATTGTGTGTGTTGGCAAAGCAACGAAACTGGTAGACAGATATCAAGGAATGATTAAGGGTTATAGTGGGGTTTTCCGCTTGGGGGAGGCTACTTCAACATGGGATGCTGACTCACCAGTCATTCAACGTGAGCCATGGGAGCATATCAAAGATGAGGATATAAAGAAGAATGCTTTGTCCTTTTGTGGGGAGATCTGGCAAGTTCCTCCTATGTTCTCAGCTATTAAAGTTGGAGGTGAAAAGATGTATGAGAAAGCAAGGAGAGGAGAAAGCATTGAACTTTCACCTAGACGAATTTCAATTTTCCAGTTTGACACAGAGCGCAGCTTAAGTGACAGACAAAATTTGATTTTTAGAGTAACATGTTCCAAAGGGACATATATTCGGTCACTTTGTGCAGATTTTGGGAAGGCTCTTGACAGCTGTGCCCATTTAACTGCTCTCCGAAGAGATTCAATTGGGCAATATTCAGCCGACGATGCATGGGACTTTCAAGAGCTGGAAGAGGCTATCACTAAAAGTTATCTCTAA 1446 0.4675 MSSTRFGFFFCHCQRLFPALSSSSSFAFSRPRLLSTTPYPLQYELIINRPSYPRPPTVRPIDSPEPEDPASETRPQLDKAQRKYYNKRRKRIYGSDSDQEAAGRRDEGFVELKPEVVEFPTLHKREEELYFHDAFTYPWEKDKHYKMVYQLEKKYFPDQSLDKAFLQPGQSNINSANVDVNADGRGKGRKKDVGMDEKLVFFEGKEKGEGESGSRELKEKKVEEFFKGLKKVPGSNKDVQVGEPFLSSRRTGLPPVWDSPHGTVVLVNKPKGWTSFTVCGKLRRLVKVKKVGHAGTLDPMATGLLIVCVGKATKLVDRYQGMIKGYSGVFRLGEATSTWDADSPVIQREPWEHIKDEDIKKNALSFCGEIWQVPPMFSAIKVGGEKMYEKARRGESIELSPRRISIFQFDTERSLSDRQNLIFRVTCSKGTYIRSLCADFGKALDSCAHLTALRRDSIGQYSADDAWDFQELEEAITKSYL* 482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0030 481 Hamap tRNA pseudouridine synthase B [truB]. 261 481 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vra1g0030 481 Pfam TruB family pseudouridylate synthase (N terminal domain) 283 433 IPR002501 GO:0006396
Vra1g0030 481 Pfam tRNA pseudouridylate synthase B C-terminal domain 434 477 IPR032819 -
Vra1g0030 481 PANTHER TRNA-PSEUDOURIDINE SYNTHASE 237 478 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vra1g0030 481 TIGRFAM TruB: tRNA pseudouridine(55) synthase 263 472 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vra1g0030 481 Gene3D Pseudouridine synthase 258 480 - -
Vra1g0030 481 CDD PseudoU_synth_EcTruB 264 475 IPR014780 GO:0001522|GO:0003723|GO:0009451|GO:0009982
Vra1g0030 481 MobiDBLite consensus disorder prediction 51 78 - -
Vra1g0030 481 SUPERFAMILY Pseudouridine synthase 263 476 IPR020103 GO:0001522|GO:0003723|GO:0009451|GO:0009982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0030 Vra-Chr1 372463 377526 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0030 264 455 NAC Transcription Factor Family AT3G57150 32.812 4.23e-20 91.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0030 K03177 - gmx:100793939 723.391
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra1g0030 1 372463 377526 Vra1g0030 1 372463 377526 ECH