Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra1g0025 ATGGAGTCAGAAGAAGCATCCACCGCCAAGCTCCGTCTCATGTGCAGCTACGGCGGCCACATACTCCCCCGTCCCGGCACCAACTCCCTCTTCTACGCCGGTGGCGAAACCCGTATCCTCTCCATCCAGCGCCGCACCCTCGCCACGCTCTCCTCCTTCCGCACCCATCTCTCCACCCTCCTCTCTCTCAAATACCCCTTCACTCTCAAGTACCAGCTCCCCCACCTCCACCTTGATTCTCTCATCTCCCTCGCCTCCGACGAAGACCTCCACATCCTCCTCGACGAGTACCACAACTCCTCTTCCCGCATCAGACTCTTCGTCTTCCCTGCTTTTCGCCACCCCAAAAGCGAGTCATGGTTCTTGGACTCCCTCAGGAGCTCCTCCATCATGCACCACTCCTTCCCTCTCGACACCACCTCCTCTTTCGCTTCCTTCACCTCTCTTCTTCCTCCATCCATCCCCTTATCTCTTCCAAGTGACAGTACTGTTTCCAGCATCATTTCGCAGCGGCAGAATATGTGTTATCAGGACCCTGCGCTTCATGTTTCGGAGGCCAGACTCAGTGCTCAGACTGTTTCCCATAATGCAAATTTGAATGCACGGTATTCTTCATTTCCACGGTTTAATTCAGTGGTGCAATCTGCTACAAGCAATTTACCCCTTCATACTCCTCTAAACTCGTTACCAAGTATTTATCAGCAACCTCGTCCTTCCACGCATCTGGTTTATCAAACCAATCCTATTTGCCCTGTATACCTCGTACCTGTTACTTTGCCTATGACTGCCTCTACTCAAGCATCAATGAATCTAAATGTTTCATCCATAGGTTCCCGTGTACCACGTAACTCTACCTCTGACTCTCAAAACTATTTAACACACACAGAAACTGCAGCACTCGTTCATGTCCCTTACAACGAAAATCAGGCACGGCAGATTGATGTTAGTCCAATGCATCATCTTCAATCTCAATCTCAGAACATATCTATTACTTCCGTGGAATCACCCGAGAGTGGAAATGAACTTGACAACAACCTTACTCGTGATCAGATATACAAATCTCAGCCCCCACCTCCGGTATTGTCTTCTAAACACCAAACCGTGAGAAAAGCCACCCCAGAGTTGTTGTCTGAAGCTCTTGCTCAGTTGCATGTGGATAGCCTCAAGACAGAAACATCACAGCCACATTGA 1191 0.4962 MESEEASTAKLRLMCSYGGHILPRPGTNSLFYAGGETRILSIQRRTLATLSSFRTHLSTLLSLKYPFTLKYQLPHLHLDSLISLASDEDLHILLDEYHNSSSRIRLFVFPAFRHPKSESWFLDSLRSSSIMHHSFPLDTTSSFASFTSLLPPSIPLSLPSDSTVSSIISQRQNMCYQDPALHVSEARLSAQTVSHNANLNARYSSFPRFNSVVQSATSNLPLHTPLNSLPSIYQQPRPSTHLVYQTNPICPVYLVPVTLPMTASTQASMNLNVSSIGSRVPRNSTSDSQNYLTHTETAALVHVPYNENQARQIDVSPMHHLQSQSQNISITSVESPESGNELDNNLTRDQIYKSQPPPPVLSSKHQTVRKATPELLSEALAQLHVDSLKTETSQPH* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra1g0025 396 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P FAMILY PROTEIN 6 387 - -
Vra1g0025 396 PANTHER OS05G0427100 PROTEIN-RELATED 6 387 - -
Vra1g0025 396 Pfam PB1 domain 31 110 IPR000270 GO:0005515
Vra1g0025 396 MobiDBLite consensus disorder prediction 319 370 - -
Vra1g0025 396 CDD PB1_UP2 14 109 - -
Vra1g0025 396 SUPERFAMILY CAD & PB1 domains 28 111 - -
Vra1g0025 396 SMART PB1_new 25 111 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra1g0025 Vra-Chr1 250480 252182 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra1g0025 8 109 MAP Kinase Kinase Kinase AT1G79570 41.667 1.84e-20 92.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra1g0025 - - var:108318981 698.353