Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1571 ATGGGAAGGGTGGCATGCTGTGAGAAGGTAGGGTTGAAGAAAGGACCATGGACTCCAGACGAAGACAAGAAGCTCCTCGACTATGTTCGGAACTATGGCCATGGAAACTGGCGTTCAGTGCCTGCCAAAGCGGGTCTTCAAAGATGTGGAAAGAGTTGCAGATTGAGATGGATTAACTATCTCAAACCTGACATAAAACGAGGAAACTTCAGCGCGGAGGAAGATCACACCATTATTCAACTTCATGCCCTTCTTGGAAACAAATGGTCAATCATAGCAGCTCATCTGCCCCAAAGAACAGACAATGAGATCAAGAACTATTGGAATACCAACATTAAGAAAAGACTCATCAGAATGGGCTTAGATCCCATTACCCACAAAAAAATAGAAAATAACACGTTTGAACCCTTTGGTGGTTGCCATGAATACCCCAAGGACAACATCAATATCTGCCATGTGGCTCAATGGGAAGGTGCTCGACTTGAAGCTGAAGCCAGAGGATCTAAGTTGCAAGTTGGATCCGGATCTTCGCAACTCTCTGGGCTAATTTTAAGCAAAATTCCAACTCAACCTTGTCTTTCATCACATTCAGTGTCAACCAAAAACAACACAGCGTATAACATGTATGCCCTCGTGCTTGCCACAAATCATGATTTTCGGTCATCTGTATCCACTTTGACCATTCCTACACTTCCTGCAGTTTCTAATATTCCACAAATCACCAACACAGAAAAGGTAATGAAAGGTTATGTATCAAACTTACAAGATGATGACATTATGGTGGCTTTGGAAGCATTTAGGACAGCAAGATCCGAGAGTATCGAAGACCTGTTTGATGAACCCACTTCCATTTAG 855 0.4292 MGRVACCEKVGLKKGPWTPDEDKKLLDYVRNYGHGNWRSVPAKAGLQRCGKSCRLRWINYLKPDIKRGNFSAEEDHTIIQLHALLGNKWSIIAAHLPQRTDNEIKNYWNTNIKKRLIRMGLDPITHKKIENNTFEPFGGCHEYPKDNINICHVAQWEGARLEAEARGSKLQVGSGSSQLSGLILSKIPTQPCLSSHSVSTKNNTAYNMYALVLATNHDFRSSVSTLTIPTLPAVSNIPQITNTEKVMKGYVSNLQDDDIMVALEAFRTARSESIEDLFDEPTSI* 285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1571 284 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vra11g1571 284 CDD SANT 69 112 IPR001005 -
Vra11g1571 284 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vra11g1571 284 CDD SANT 16 61 IPR001005 -
Vra11g1571 284 Gene3D - 13 66 - -
Vra11g1571 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vra11g1571 284 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vra11g1571 284 Gene3D - 69 116 - -
Vra11g1571 284 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vra11g1571 284 PANTHER TRANSCRIPTION FACTOR MYB106 1 191 - -
Vra11g1571 284 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vra11g1571 284 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Vra11g1571 284 SMART sant 66 114 IPR001005 -
Vra11g1571 284 SMART sant 13 63 IPR001005 -
Vra11g1571 284 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 191 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1571 Vra-Chr11 19668187 19669347 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1571 1 194 MYB Transcription Factor Family AT3G01140 61.421 1.49e-82 250
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra11g1571 Myb_DNA-binding 8.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1571 K09422 - gmx:100790887 403.675