Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1555 ATGTTGGCCTCCACACTCCTACCTCCCTCCAAGCTCCTCCCTTCGCATTTCGTCCCTCCCATCACCGTCGCAGAAGCTCCTCTGAGAAACAGAGTCGCAATCTTTTCCAAATCCACCCCTAAACTCGCTTTCGTTGCCAGGGCCACCAATGACGCCCGTGACGGCACCGTTGACGCAACCTCTTCGCCGGGTGTTGATGCAGTAACAAGTACATCTTCTGGCCTTGGTGATGGTTATGTGGCTTTGTTTGTTCGTATGTTAGGCCTTGATCGTGATCCTCTGGATAGAGAACAAGCTATAATTGCTCTTTGGAAGTATTCACTCGGTGGAAAGAAGTGTATAGACACTATAATGCAGTTTCCTGGTTGTATTAATCTTGTTGTGAACCTCCTCAGATTAGAGTCTACCTCAGCATGCGAGGCAGCTGCAGGCCTTCTGCGATCATTGTCTTCAGTCAATCTGTACAGAAATTTTGTAGCTGAAAGTGGAGCGATAGAAGAGATAAACAGATTGCTGAGACGATCTTCCTTGACTCCTGAGGTAAAGGAGCAGAGTTTGACTACACTCTGGAATTTATCTGTTGATGAGAAGCTCTGGATTAAAATTTCAAAGACTGAGATCCTTCCTGTAGCTATTAAGTACCTTGAAGATGAGGACATTAAAGTGAAGGAGGCTGCAGGGGGCATTTTGGCAAATTTAGCACTGAGTCGTGTTAACCACAGCATCATGGTTGAAGCGGGTGTTATACCAAAATTGGCAAAGTTCTTAAGATCTAATCTGGAAGGATCTAAAGTTCTTAGGAAGGAAGCAAGGAATGCATTGTTAGAACTTTTTAAGGACAATGATTATAAAATTCTTGTTATGGAGGAAGGTCTGGTTCCTGTCCCATCAATTGGTGCTGCAGCCTTTAAGTCATTCAACCCAGGCTTACATTTGTGGCCCACATTACCTGATGGTACTGAAATTGAAAGGACTTCTAGACAGCCATCACCATTTGGTGCTTCGGAATTACTTCTTGGATTAAATATTGATGACAAGAATGCTAACTTAGAGGAAGCAAAGGTCAGTGCAATGATTGGACGAAGCCAACAACAATTCCTTGCTCGTGTTGGAGCCTTAGAAATGGAAGAAAAAACTATACCTAATTCTGATTGCTCAAATGATCAGAGGTTTACACTTTTACCTTGGATGGATGGTGTTGCTCGGTTAGCACTGATATTAGAACTGGAAGATAAGTCTGCATCAATAAAGGCTGCAGAGTCAATTGCCACTGCATGTATCAATGAACATATGCGTATTGCATTCAGGGAGGCTGGAGTAATTAAGCATTTAATAAGGCTTTTGAAGTGTGATGACGATGCAGTCCAGTTGGCGGTAACACAAGCTTTGGAAAGGCTGTCTGTTAGCGATATTGTTTGCCAGGTAATTGAAGCTGAAGGGGTTTTAGGTCCTTTAGTTAGTATTTTGAAATGCTCGGGGACAGTGGGAACTATTGTGGAAAAGTCTTTGAGTATACTAGCAAGGATATTTGACCTCAGTAAACAAAAGCAACTGGAGTTAATGGATTTGAGAAGGCATTTGGTGGAGGAAAAAATGACTGTTTCAACCAGGAATAATATACTGGATTCTGTTTTCATTGCACAGCTTGTTGAGATTCTGAAGTCCTCTCCACCCAATTTACAAGGAAAAGCTGCTTCTGTGCTTGAATTTGTGGCATTGAGTGACCCAACTCTAGCCCAAATTTGTTTTTTGGATATTGAATCTGGTCTCCGTTCTGCTTTTCAACAAAAGATTTTGAAAATTTCAGAGGACATGGAATCTGATGCAGAAGATCAGTTTTATGAAGCATATGCAATTGAATTTGAAGAAGCTGGTCTGGCAATATCTGCAGCATCACGATTATTGACTATACTACTCGATTGCGAGCAGTTCCGCAACAAAATAAATGCCCCCTACTTCATTGATATGCTTCGCGAAATCCTCAAGTCCAATATTCCTCTCCGCAGCAAAGATTCGGTAGTTGCATGCCTACTTAAACTGAGTTCTTTCTCTGCCTCCATCACCAGTGTCTATCCAATCAACGTGGAAGTTACACTTTACGAGACAATCCCACGACTTGTAGAACAGATAAAAACTTCATTCTCCCCAGAAGCACAAGAAACTGCTGTTGTAGAACTTAATAGAATAATATCTGAAGGAGTGGTAGATTCCACAGACGAAGCTATTATTTCAGAGGGGGCAATAAGTTCATTGGTGAAGCTGATTGAAGAAGGTAGTGAAAGGGCTGTTGAAGCAAGCTTGGCAATACTGTACAATCTGAGTAAGAACAATGAGAACCACTCAGCACTGGTGACTGCCGGAGCCCTGCAGGTCTTAAAAAGAATTGTTCTTGCAAACAGACCACACTGGGAACGGGCACTTCTTTTACTCAGGATTTTGCAACCCTGA 2448 0.424 MLASTLLPPSKLLPSHFVPPITVAEAPLRNRVAIFSKSTPKLAFVARATNDARDGTVDATSSPGVDAVTSTSSGLGDGYVALFVRMLGLDRDPLDREQAIIALWKYSLGGKKCIDTIMQFPGCINLVVNLLRLESTSACEAAAGLLRSLSSVNLYRNFVAESGAIEEINRLLRRSSLTPEVKEQSLTTLWNLSVDEKLWIKISKTEILPVAIKYLEDEDIKVKEAAGGILANLALSRVNHSIMVEAGVIPKLAKFLRSNLEGSKVLRKEARNALLELFKDNDYKILVMEEGLVPVPSIGAAAFKSFNPGLHLWPTLPDGTEIERTSRQPSPFGASELLLGLNIDDKNANLEEAKVSAMIGRSQQQFLARVGALEMEEKTIPNSDCSNDQRFTLLPWMDGVARLALILELEDKSASIKAAESIATACINEHMRIAFREAGVIKHLIRLLKCDDDAVQLAVTQALERLSVSDIVCQVIEAEGVLGPLVSILKCSGTVGTIVEKSLSILARIFDLSKQKQLELMDLRRHLVEEKMTVSTRNNILDSVFIAQLVEILKSSPPNLQGKAASVLEFVALSDPTLAQICFLDIESGLRSAFQQKILKISEDMESDAEDQFYEAYAIEFEEAGLAISAASRLLTILLDCEQFRNKINAPYFIDMLREILKSNIPLRSKDSVVACLLKLSSFSASITSVYPINVEVTLYETIPRLVEQIKTSFSPEAQETAVVELNRIISEGVVDSTDEAIISEGAISSLVKLIEEGSERAVEASLAILYNLSKNNENHSALVTAGALQVLKRIVLANRPHWERALLLLRILQP* 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1555 815 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 746 788 IPR000225 GO:0005515
Vra11g1555 815 SUPERFAMILY ARM repeat 414 796 IPR016024 -
Vra11g1555 815 SMART arm_5 735 775 IPR000225 GO:0005515
Vra11g1555 815 SMART arm_5 152 194 IPR000225 GO:0005515
Vra11g1555 815 SMART arm_5 428 468 IPR000225 GO:0005515
Vra11g1555 815 SMART arm_5 689 731 IPR000225 GO:0005515
Vra11g1555 815 SMART arm_5 236 279 IPR000225 GO:0005515
Vra11g1555 815 SMART arm_5 110 151 IPR000225 GO:0005515
Vra11g1555 815 Gene3D - 622 813 IPR011989 -
Vra11g1555 815 SUPERFAMILY ARM repeat 77 506 IPR016024 -
Vra11g1555 815 Gene3D - 352 621 IPR011989 -
Vra11g1555 815 Pfam Armadillo/beta-catenin-like repeat 428 467 IPR000225 GO:0005515
Vra11g1555 815 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 163 196 IPR000225 GO:0005515
Vra11g1555 815 PANTHER ARM REPEAT SUPERFAMILY PROTEIN 29 814 - -
Vra11g1555 815 Gene3D - 76 296 IPR011989 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1555 122 249 U-box Gene Family AT2G23140 31.250 1.49e-06 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1555 - - gmx:100793128 1223.38