Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1553 ATGACCAAACCCAACTCCTTCTTTCACAATCTCATCAAGCCCTTCAAATTCAGTTCCAGTAAAGAGGAACATAGCGGAGACGATATGCAAAACTTAGCTGCACAGGAGAATAAGGTCTTCTCTTACGAAACATTGGTCACTGCTACAAACAAATTTAGCATTCTTAACAAGCTTGGTGAAGGGGGATTTGGACCCGTCTTTAAGGGGAAATTGAGTGACGGGAGAGAGATTGCAGTGAAGAGGTTATCGCGTAGATCGAATCAAGGGAAGACGCAGTTCATCAACGAGGCCAAGTTGTTGGGTCGTGTGCAGCACCGAAATGTGGTGAATCTGATCGGTTACTGCACCCATGCCTCCGAGAAGCTTCTTGTTTATGAGTATGTCCCTCACAAGAGCCTTGACAAGTTTCTCTTCAAAACGGGGAAGAAAGAAGAGCTAAACTGGAAACGTAGATTGGACATCATCAATGGGGTGGGAAGGGGTCTGCTTTATCTTCACGAAGACTCTCACAACTGCATAATCCATCGCGACATAAAGGCCAGTAACATCTTACTGGATGAAAAATGGAGCCCTAAGATAGCAGATTTTGGTCTCGCGAGACTCTTCCCCGAAGACCAAACCCACGTCAACACCCGTGTGGCTGGAACCAACGGCTATTTGGCTCCAGAATATTTAATGTATGGCCATTTATCTGTGAAGGCAGACGTATTCAGCTATGGAGTTTTGTTGTTGGAATTGGTCACTGGCCAGAGAAATTCGTCGTTTGATGCGAACTCTAGTGCGCAGAATCTCCTCGACTGGGCATACTGGCTATACAAGAAGGGGAGAGCTCTGGAAATGGTGGACCCTGCATTGGTGTCTTCAGTGATAACTGAAGAAGTAGAAATGTGCATTAAACTGGGTCTGTTGTGCACTCAAGGTGATCCAAACCTGCGTCCAACCATGGGACGTGTGGTGGTGATGCTGTCAAAGAAACCGAACCACATGGAAGAACCAACAAGACCAGGAATGGCTGGTTCCAGATTCAGAAGAGTGTCTCACAGACGACCCTCTGCAATGTTTTCTTCTGGGGTTGATGATGACTCTCATTCACACACTGACACTGGTGATTCAAGCAACTATGGCACTAATAATAATACTACTTCTTCTGTAACATCAACAACACCAAGCTCCAGTGCTACTGCAGAAGTAGACCCCCGAGGGAAACGACCAATGCAAGGTTAG 1224 0.4624 MTKPNSFFHNLIKPFKFSSSKEEHSGDDMQNLAAQENKVFSYETLVTATNKFSILNKLGEGGFGPVFKGKLSDGREIAVKRLSRRSNQGKTQFINEAKLLGRVQHRNVVNLIGYCTHASEKLLVYEYVPHKSLDKFLFKTGKKEELNWKRRLDIINGVGRGLLYLHEDSHNCIIHRDIKASNILLDEKWSPKIADFGLARLFPEDQTHVNTRVAGTNGYLAPEYLMYGHLSVKADVFSYGVLLLELVTGQRNSSFDANSSAQNLLDWAYWLYKKGRALEMVDPALVSSVITEEVEMCIKLGLLCTQGDPNLRPTMGRVVVMLSKKPNHMEEPTRPGMAGSRFRRVSHRRPSAMFSSGVDDDSHSHTDTGDSSNYGTNNNTTSSVTSTTPSSSATAEVDPRGKRPMQG* 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1553 407 MobiDBLite consensus disorder prediction 368 395 - -
Vra11g1553 407 Pfam Protein kinase domain 53 317 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1553 407 Gene3D Transferase(Phosphotransferase) domain 1 128 336 - -
Vra11g1553 407 PANTHER RECEPTOR-LIKE KINASE 3 372 - -
Vra11g1553 407 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 3 372 - -
Vra11g1553 407 CDD STKc_IRAK 58 324 - -
Vra11g1553 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 173 185 IPR008271 GO:0004672|GO:0006468
Vra11g1553 407 Gene3D Phosphorylase Kinase; domain 1 15 127 - -
Vra11g1553 407 ProSiteProfiles Protein kinase domain profile. 52 331 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1553 407 MobiDBLite consensus disorder prediction 324 407 - -
Vra11g1553 407 SMART serkin_6 52 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1553 407 SUPERFAMILY Protein kinase-like (PK-like) 37 349 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1553 Vra-Chr11 19337264 19341691 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1553 40 338 Receptor kinase-like Gene Family AT4G11530 51.827 6.55e-109 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra11g1553 Pkinase 5.7e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1553 - - gmx:100811523 610.912