Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1545 ATGGAGAGAGATTTTATGGGTCTGAACTCGAAGGAACCATTCGTTGGAACGAAGGAAGAGATGAATAATGATAGTGGGTGCAAAATCTCAGGTTTCACAAAAGGAGGTATGGTAAAATGGCCCTTCATGAACAAAGTATCTGTCCATCCTCATTCGATGTCTTTGAATACTCCTCAGAAATCTGTCAATCATGATGAACAAGGTGGTGGCATTCATTTTTCCCTGAGTCCTTATACTACACTACATGATGTGAATCATATGAACCGCCCTCATAATGTGAAGATGTTTCCAGTTCCCAACCAAGCAATTCCAGTTTCCATGGGACCTCTATCACTAAATAATCCCTTTGCAACTCTTGGTCAGAATATGAATGCTTCTAGTATGAAGCAACCACTACTAGGGGGAATACCTGTTACAGCACCCCATTCAGTTCTTCCTGTAGTTGGTGTTGGTGCTGTTGCTGGAATGACTGAATCATGTGTGAAACCATCTGTATCTGTTCCTAAACTTACCATCTTCTATGCTGGCACTGTGAATGTCTTTGATGATATAACTCCTGAGAAGGCTCAAGCAATCATGTTGATGGCTAGGAATGGCTTATCAGTTGCTTCTAAGGTGTCAGTGCCTAATGTTCAGGCACCCATACATAGTAAACTCATACCACTCTCAAGTAATTTATCTGGGTCTTCACATACTGGTACAAAATCAGGGAGTGTTTCAAGTAGCAGTGATGAATTTCTGGCAGCTAAAACATCTGGTGGTACCCCTACTTCTGTTAACAAAGCAGAAACTCCTAAAGTAGTCAACACAAACACCATGCTGTTATCAGCTGTGCCACAAGCTCGCAAGGCATCATTGGCTCGATTTTTGGAGAAGCGCAAAGAAAGGGTGTTGAGTGCAGCACCATATAACCTGGACAAGAAGTATGAGAATATGTCAGAACAGAGTGCAACTGTTTCTAACATCAGTGGAAGTGAGGGTGTAACCAAACAAGGATAG 999 0.4204 MERDFMGLNSKEPFVGTKEEMNNDSGCKISGFTKGGMVKWPFMNKVSVHPHSMSLNTPQKSVNHDEQGGGIHFSLSPYTTLHDVNHMNRPHNVKMFPVPNQAIPVSMGPLSLNNPFATLGQNMNASSMKQPLLGGIPVTAPHSVLPVVGVGAVAGMTESCVKPSVSVPKLTIFYAGTVNVFDDITPEKAQAIMLMARNGLSVASKVSVPNVQAPIHSKLIPLSSNLSGSSHTGTKSGSVSSSSDEFLAAKTSGGTPTSVNKAETPKVVNTNTMLLSAVPQARKASLARFLEKRKERVLSAAPYNLDKKYENMSEQSATVSNISGSEGVTKQG* 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1545 332 Pfam tify domain 169 196 IPR010399 -
Vra11g1545 332 ProSiteProfiles Tify domain profile. 163 198 IPR010399 -
Vra11g1545 332 MobiDBLite consensus disorder prediction 312 332 - -
Vra11g1545 332 PANTHER PROTEIN TIFY 7 14 322 - -
Vra11g1545 332 MobiDBLite consensus disorder prediction 224 265 - -
Vra11g1545 332 Pfam Jas motif 279 303 IPR018467 -
Vra11g1545 332 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 14 322 IPR040390 -
Vra11g1545 332 SMART tify_2 163 198 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1545 Vra-Chr11 19172140 19175370 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1545 38 308 Tify Gene Family AT3G17860 37.500 3.47e-31 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Tify Vra11g1545 tify 1e-15 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1545 K13464 - gmx:100799314 371.318