Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1529 ATGTCAGTCTCCAAAGCACTCAAGTCATCAAAACTTGTGTCATGGAAACCTACGGGGCGTCTTCAGCAAACCCTAGCGGGATGCGTGGAGAGGAACGGCGTGGGTCTGCATTCGGGGAAGGTTTCGTCGGTGAGGCTGTGGCCGGAGCTCGCTTCCCGAGGCAGGTACTTCGAATTTCGTTGCCGTTCGATTCCCGCCGCTATCGAGTTCGCTCAGATTTCGCCGCTGTGCACCTCTCTGAGCAAGGACGGGTTCCGAATTCGAACCGTGGAGCATTTGCTTTCGGCTTTGGAGGCTTCGGGTGTTGATAACTGCAGGATTGAGATTGAGGCTTTTGATGATAAAGAGATCGACGCTGAGATTCCTATATTTGATGGGTCAGCAAGGGAATGGGTGGAAGCAGTGGAAGAAGTTGGTTTAGCGGTGGCCACTGATCTTGATGGCAATTGTGTTGAGAAAATGGCACCACATGTGAATGAACCAGTGTGTGCTTGGAGAAATGATTCTTTTGTCGTTGCATTTCCTTCTCCAGCTGTTCAAATAACTTATGGCATCAATTTTCCGCAGGCACCTGTTATTGGCCGCCAATGGTTTTCTACTTACCCCTTGGATAATTTGGTTTATTCCATGCAGATAGCTTTGTCAAGAACCTTCTGCATTTATGAGGAGATTGAACCTATGCGCAATGCTGGACTTATCAAAGGAGGTTCTCTAAAGAATGCCATTGTTTGCAGTTCCAGTAAAGGTTGGTTGAATCCACCTCTGCATTTCATTGATGAACCATGTCGTCACAAGATCTTAGACCTCATTGGTGATCTCTCGATGGTTGCTCAATCGGGGAATCAAGGACTCCCAGTAGCACACATCGTAGCTTACAAGGGTGGCCATGCATTGCATGCTGATTTCGCACGCCGCCTGATAGGAATGAGTGGAAAGTCCAACATGTTGACAATGGTTGCTGAGAAGCTGTTCTTTTAG 978 0.4806 MSVSKALKSSKLVSWKPTGRLQQTLAGCVERNGVGLHSGKVSSVRLWPELASRGRYFEFRCRSIPAAIEFAQISPLCTSLSKDGFRIRTVEHLLSALEASGVDNCRIEIEAFDDKEIDAEIPIFDGSAREWVEAVEEVGLAVATDLDGNCVEKMAPHVNEPVCAWRNDSFVVAFPSPAVQITYGINFPQAPVIGRQWFSTYPLDNLVYSMQIALSRTFCIYEEIEPMRNAGLIKGGSLKNAIVCSSSKGWLNPPLHFIDEPCRHKILDLIGDLSMVAQSGNQGLPVAHIVAYKGGHALHADFARRLIGMSGKSNMLTMVAEKLFF* 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1529 325 Gene3D lpxc deacetylase, domain 1 20 145 IPR015870 GO:0008759|GO:0009245
Vra11g1529 325 SUPERFAMILY Ribosomal protein S5 domain 2-like 21 141 IPR020568 -
Vra11g1529 325 TIGRFAM lpxC: UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase 22 310 IPR004463 GO:0008759|GO:0009245
Vra11g1529 325 Pfam UDP-3-O-acyl N-acetylglycosamine deacetylase 22 307 IPR004463 GO:0008759|GO:0009245
Vra11g1529 325 SUPERFAMILY Ribosomal protein S5 domain 2-like 160 307 IPR020568 -
Vra11g1529 325 PANTHER UDP-3-O-ACYL-N-ACETYLGLUCOSAMINE DEACETYLASE 1, MITOCHONDRIAL-RELATED 3 313 IPR004463 GO:0008759|GO:0009245
Vra11g1529 325 Hamap UDP-3-O-acyl-N-acetylglucosamine deacetylase [lpxC]. 20 311 IPR004463 GO:0008759|GO:0009245
Vra11g1529 325 Gene3D lpxc deacetylase, domain 2 157 323 IPR011334 GO:0008759|GO:0009245
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1529 9 306 Carbohydrate Esterase AT1G25054 65.101 7.52e-142 402
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1529 K02535 - gmx:100814465 506.138