Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1528 ATGTCATCACAGATACCCACAGCGGAGGCGCCGCTGCTCCGCAACCGCCACGACGCCGCCAGAGGGCCAGCGCTAGCGCTCCTCCTCGGACGAGCCGGCCGTCGAGGCCCCTCCATGCTAGTGAGGGAGACCGCTGCGCGCGAGCTCGAGGAGCGCCGCACAGACTGGGGTTACTCCAAGCCGGTGGTGGCGCTTGACATGTCCTGGAACATGGCCTTCGTGGTCGTCTCGGCCGCGATGCTTGCATGCACCGTCAGCGAGCGCCCGAACTCGCCGATCCGTGTGTGGATCATCGGGTACGCGCTGCAGTGTCTTGTGCATGTGGTGCTCGTCTGGCTCGAGTACAGGCGTCGTAGCCGGGTTGACTCGCGCCGCGGCCAGGGGATGCAGGACGTGGAGAGCCAGGCAGGCAGTGACAACGATGAGGGCGGCAACGACAGCGATAGCGACGTGGTGGATGGGAGCTCTGGCAATTCGTCTCGGTCTCGCTCCCGGTTCACAAAACGATGTGAATCGTTAAATACTGGGGTTTCATTCCTTTGGTGGATAGTGGGCTTTTACTGGGTTGTCTCTGGTGGTGATATACTTCTGCAAGATGCCCCACGATTGTATTGGTTATCTGTTGTCTTTCTGGCATTTGATGTCTTTTTTGCCATCTTTTGTGTTGTCTTGGCGTGCTTGATTGGTATTGCTCTTTGTTGTTGTTTGCCCTGCATCATTGCTATTCTCTATGCGGTTGCAGGACAGGAGGGTGCGTCAGAAGCAGATCTTAGCATACTTCCAAAATACAGATTTAGAATACTAAGCAATGAGGATAAGCCCAGTGGCGGAGCTGGATCAATGGTTCCCATAGAAACCAGCAGTGCTTACTTGGCAAATGAACGATTGCTTTTACCAGAGGATGCGGAATGCTGTATTTGCCTCTGTTCATACGAAGATGGAGCAGAGCTCCATGCTCTTCCTTGCAACCATCATTTTCATTCTTCATGCATAGTGAAATGGCTGAAGATGAATGCTACTTGTCCTCTCTGCAAGTACAATATTCTCAAGGGAAACGAACAAGTTTGA 1068 0.5384 MSSQIPTAEAPLLRNRHDAARGPALALLLGRAGRRGPSMLVRETAARELEERRTDWGYSKPVVALDMSWNMAFVVVSAAMLACTVSERPNSPIRVWIIGYALQCLVHVVLVWLEYRRRSRVDSRRGQGMQDVESQAGSDNDEGGNDSDSDVVDGSSGNSSRSRSRFTKRCESLNTGVSFLWWIVGFYWVVSGGDILLQDAPRLYWLSVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYRFRILSNEDKPSGGAGSMVPIETSSAYLANERLLLPEDAECCICLCSYEDGAELHALPCNHHFHSSCIVKWLKMNATCPLCKYNILKGNEQV* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1528 355 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 5 355 - -
Vra11g1528 355 SMART ring_2 304 344 IPR001841 -
Vra11g1528 355 MobiDBLite consensus disorder prediction 149 163 - -
Vra11g1528 355 CDD RING-H2_PA-TM-RING 303 345 - -
Vra11g1528 355 ProSiteProfiles Zinc finger RING-type profile. 304 345 IPR001841 -
Vra11g1528 355 PANTHER TARGET OF ERK KINASE MPK-1 5 355 - -
Vra11g1528 355 MobiDBLite consensus disorder prediction 126 163 - -
Vra11g1528 355 MobiDBLite consensus disorder prediction 128 142 - -
Vra11g1528 355 SUPERFAMILY RING/U-box 292 349 - -
Vra11g1528 355 Pfam Ring finger domain 303 345 IPR001841 -
Vra11g1528 355 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 285 350 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1528 Vra-Chr11 18923565 18934599 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1528 8 354 C3H Transcription Factor Family AT1G68070 67.622 2.23e-172 481
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1528 - - gmx:100816519 540.806