Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1527 ATGCTTTCCCGGAAAATGGGTTTCCGTGAGTACATCGAAGCATTGGAGGAAGAAAGGAGAAAAATTCAAGTTTTCCCTAAAGAGCTTCCTCTGTCGTTGGAGCTTGTCACGCAAGCAATTGAGGGGTGCAGGCAGCAATTGTTTGGAACGGTTACGGAGTACAATTTGAATGGCCAATCGGAGTGTTCGGAGCAGACATCAACGGATGAAGGACCTGTTTTTGAGGAGTTCATTCCTATTAAGAAAGGAGCAGCTCAAGATTCTGTTGAAGAAGAGGAAGAAGAAGAAAATGAAGATGAAGATGAGCAACATTCTCATCAGCACAGGAAAACCACTTCTGATAAAAAGAAATCAGATTGGCTTAGATCTGTTCAGTTGTGGAATTCCAATCCCCCTCCTACCAAAGAGGATGTGCCTAGAAAAGCAAATGTTGTTGAAGTGAAGAGAAACGGTGGAGCTTTTCAACCGTTCCAAAGAGAGGAAAAAAGTGCTATAGTTGACGGAAAGGCTAATAACTATGCATCAGCAATTGGTAAAACACCGTCTTCACCACCAGTTCCTGCTACAAGTTCCACGGGACCAGTGAGAATAGACAGCAGAAAAGAGGAGAAAGGACAGACTCAGAGAAAGCAACGACGATGTTGGTCACAGGAATTGCACAAGCGATTCTTGCATGCCCTTCAGCAACTTGGTGGTGCAGATTCTGCCACGCCCAAACAGATCAGGGAGCTAATGAAGGTTGATGGCCTCACCAATGATGAAGTAAAAAGCCACTTGCAGAAATTTCGTCTGCACACTAGAAGAAGTCCCATAATACACAACAATGGAAATTCACAAGCAGCACCTTTGTTTCTTGTGGGGAACATTTTTGTGCAGCCACCAGAATATGGTGTAGTAGCTACCTCAACAGCTTCTGGAGGAGAATTGACCACAGTTACTGCTCCAACTGGAATATATGCACCTGTGGCTGCACATCCTCCACTTGTCACAAACACTCCAATAATGAACCATTCACCTTCAAAAGAAAGGCCTAATGATAATAATAATAATAGTGCTCAATCAAACTCACCTGCCTCATCATCTTCTACACACACAATCACAACTACTTAA 1110 0.4342 MLSRKMGFREYIEALEEERRKIQVFPKELPLSLELVTQAIEGCRQQLFGTVTEYNLNGQSECSEQTSTDEGPVFEEFIPIKKGAAQDSVEEEEEEENEDEDEQHSHQHRKTTSDKKKSDWLRSVQLWNSNPPPTKEDVPRKANVVEVKRNGGAFQPFQREEKSAIVDGKANNYASAIGKTPSSPPVPATSSTGPVRIDSRKEEKGQTQRKQRRCWSQELHKRFLHALQQLGGADSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSPIIHNNGNSQAAPLFLVGNIFVQPPEYGVVATSTASGGELTTVTAPTGIYAPVAAHPPLVTNTPIMNHSPSKERPNDNNNNSAQSNSPASSSSTHTITTT* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1527 369 MobiDBLite consensus disorder prediction 175 195 - -
Vra11g1527 369 MobiDBLite consensus disorder prediction 196 214 - -
Vra11g1527 369 MobiDBLite consensus disorder prediction 83 118 - -
Vra11g1527 369 MobiDBLite consensus disorder prediction 101 118 - -
Vra11g1527 369 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 368 - -
Vra11g1527 369 MobiDBLite consensus disorder prediction 329 369 - -
Vra11g1527 369 Gene3D - 209 267 - -
Vra11g1527 369 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 207 267 IPR017930 -
Vra11g1527 369 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 368 IPR044787 GO:0003700|GO:0006355
Vra11g1527 369 SUPERFAMILY Homeodomain-like 207 268 IPR009057 -
Vra11g1527 369 Pfam Myb-like DNA-binding domain 212 261 IPR001005 -
Vra11g1527 369 MobiDBLite consensus disorder prediction 331 369 - -
Vra11g1527 369 MobiDBLite consensus disorder prediction 175 214 - -
Vra11g1527 369 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 210 265 IPR006447 GO:0003677
Vra11g1527 369 Coils Coil 82 102 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1527 Vra-Chr11 18902410 18904888 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1527 10 324 G2-like Transcription Factor Family AT1G68670 48.048 7.17e-80 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vra11g1527 Myb_DNA-binding 2.2e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1527 - - gmx:100819750 538.11