Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1526 ATGCAAACTCACCCTTTCTCTTACATATCTTCCTGTCCTGGAACTACTGCATTCGTGGAACCTCATCATCATCATCATCATCATCATCATCATCATCATCATCATCAAGAGGCTGTGGTGGATGAAGCTTCCATTTCCCTCTCTCTTGGCCCTCCTGGCCAACTGCACCACCACCCCAAAGGCACTTCCTCCTCCTCAAACCTCCCTTCCACTCTGCACCATCATCAGCATAACCCTACCTCTGATGACCAGAGAGGCGTAACTGTGGCCCTTCACATTGGCCTTCCCAATCCCGCCACTTCACCCAACAGTCCTACCACCACCACCACCACCACCACCAAGCCTGATCTTCATTTGGCTTCTGCTCCCACTCAGGGCCAGTACTGGATCCCTTCTCCGGCTCAAATCCTCATCGGACCCACCCAGTTCTCTTGCACTGTCTGCAACAAAATGTTCAACCGTTTCAACAACATGCAGATGCACATGTGGGGACACGGCTCACAATATAGGAAAGGACCGGAATCACTGAGAGGAGCAAAACCAGCTTCTTCAATGCTGAGGCTTCCCTGCTATTGTTGTGCTGAGGGTTGCAAAAACAACATAGACCATCCGAGATCAAGGCCATTGAAGGACTTCAGGACTCTTCAGACTCATTACAAGAGGAAGCACGGAGCAAAGCCTTTTGGGTGCAGAAAGTGTGGCAAGCCTTTTGCTGTGAGAGGAGATTGGAGGACACACGAGAAAAACTGTGGTAAGCTTTGGTTCTGCATCTGCGGCTCTGATTTCAAGCACAAGAGGTCCCTCAAAGACCATGTTCGTGCCTTTGGTGATGGCCACGCTCCTCACACCGTCGAGAGTTGTGATCAGATTGGAGAGGATGACTTGTTCGGTGACGAAGATGAAGAGGAGCTAGATTTAGAAGATGATGATGAAGGTTATAACAGTAATGAAGTGGGTTTTGGTTTTAATTAA 972 0.4918 MQTHPFSYISSCPGTTAFVEPHHHHHHHHHHHHHHQEAVVDEASISLSLGPPGQLHHHPKGTSSSSNLPSTLHHHQHNPTSDDQRGVTVALHIGLPNPATSPNSPTTTTTTTTKPDLHLASAPTQGQYWIPSPAQILIGPTQFSCTVCNKMFNRFNNMQMHMWGHGSQYRKGPESLRGAKPASSMLRLPCYCCAEGCKNNIDHPRSRPLKDFRTLQTHYKRKHGAKPFGCRKCGKPFAVRGDWRTHEKNCGKLWFCICGSDFKHKRSLKDHVRAFGDGHAPHTVESCDQIGEDDLFGDEDEEELDLEDDDEGYNSNEVGFGFN* 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1526 323 SUPERFAMILY beta-beta-alpha zinc fingers 124 164 IPR036236 -
Vra11g1526 323 MobiDBLite consensus disorder prediction 298 323 - -
Vra11g1526 323 SUPERFAMILY beta-beta-alpha zinc fingers 211 248 IPR036236 -
Vra11g1526 323 MobiDBLite consensus disorder prediction 58 75 - -
Vra11g1526 323 MobiDBLite consensus disorder prediction 97 115 - -
Vra11g1526 323 Gene3D Classic Zinc Finger 183 275 - -
Vra11g1526 323 ProSitePatterns Zinc finger C2H2 type domain signature. 145 165 IPR013087 -
Vra11g1526 323 PANTHER ZINC FINGER PROTEIN WIP2 22 313 IPR043584 GO:0003700|GO:0010468
Vra11g1526 323 MobiDBLite consensus disorder prediction 19 115 - -
Vra11g1526 323 ProSiteProfiles Zinc finger C2H2 type domain profile. 143 170 IPR013087 -
Vra11g1526 323 PANTHER ZINC FINGER PROTEIN WIP6 22 313 - -
Vra11g1526 323 MobiDBLite consensus disorder prediction 298 314 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1526 Vra-Chr11 18861577 18863557 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1526 41 284 C2H2 Transcription Factor Family AT1G13290 71.020 3.50e-121 348
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra11g1526 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1526 - - aprc:113870355 502.286