Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1523 ATGGACTGCATGGATGAGAGTACCACAACTGAATCACTCTCATCTGAGGACAAGCTCCTTCTGCTTTCCTCCACCAATCTTTCTCCTCCGCCGCCCTCCACCACCTTGTGTCGCGTCGGCAGCGCCGCCAGCGCAATCCTAGATCCTGAGGGCGCCGCCGCCGGAAACACTGAGGCCGAGTCCAGGAAGCTTCCCTCCTCAAAGTACAAAGGCGTCGTCCCGCAGCCCAACGGCCGCTGGGGCGCCCAGATTTACGAGAAGCACCAGCGCGTCTGGCTGGGAACCTTCAACGAGGAAGACGAGGCGGCCAGGGCATACGACATCGCCGCGCAGCGCTTCCGCGGCAAGGACGCGGTCACCAACTTCAAGCCGGTATCCGCCGGCGCCGGAGAGGGCGACGACGAGGACGGCGAGGCCGAGTTTCTCAACTCGCATTCCAAGTCGGAAATCGTCGACATGCTCAGGAAACACACGTACAATGACGAGCTTGAGCAGAGCAAGCGCAGCCGCGGAGTCGTACGGCGGCGCGGCGGAGCCGCCGCAGCCGGAACCGGTAATTCGATCTCTGGCGCGTGTTTTGTAAAGGCGCGGGAGCAGCTGTTCGAGAAGGCGGTTACGCCGAGCGACGTGGGGAAGCTGAATCGGTTGGTGATCCCGAAGCAACACGCGGAGAAGCACTTCCCGTTGCAAAGCGTTAACGGCGTTAGCGCGACGGCGGCGAAAGGCGTTTTGTTGAACTTCGAAGACGTTGCGGGGAAAGTGTGGCGATTCCGCTACTCGTATTGGAATAGTAGCCAGAGCTACGTTTTGACCAAAGGTTGGAGCCGGTTCGTTAAAGAAAAGAATCTGAAAGCCGGTGACACGGTTTGCTTTCACCGGTCCACTGGACCGGACAAACAGCTCTATATCGATTGGAAGGCGCGGAATAATAATGTTAACGAGGTTGGGTTGTTCGGTCCAGTCGGGCCGGTTGTTGAACCGATTCAGATGGTTCGGCTCTTCGGCGTTAACATTTTGAAACTACCCGGTTCGGAGCCTAATGGTAACAATAATGCAAGCGGAACTATTCCCGGGTTCTGCAATGGCAAAAGAAGAGAAATGGAGCTGTTTTCGTTGGAGTGTAGCAAGAAGCCTAAGATTATTGGTGCTTTGTAA 1155 0.5688 MDCMDESTTTESLSSEDKLLLLSSTNLSPPPPSTTLCRVGSAASAILDPEGAAAGNTEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPVSAGAGEGDDEDGEAEFLNSHSKSEIVDMLRKHTYNDELEQSKRSRGVVRRRGGAAAAGTGNSISGACFVKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSVNGVSATAAKGVLLNFEDVAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDKQLYIDWKARNNNVNEVGLFGPVGPVVEPIQMVRLFGVNILKLPGSEPNGNNNASGTIPGFCNGKRREMELFSLECSKKPKIIGAL* 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1523 384 Gene3D - 191 316 IPR015300 -
Vra11g1523 384 SUPERFAMILY DNA-binding pseudobarrel domain 199 304 IPR015300 -
Vra11g1523 384 Pfam AP2 domain 67 115 IPR001471 GO:0003700|GO:0006355
Vra11g1523 384 ProSiteProfiles B3 DNA-binding domain profile. 201 309 IPR003340 GO:0003677
Vra11g1523 384 Gene3D AP2/ERF domain 67 124 IPR036955 GO:0003700|GO:0006355
Vra11g1523 384 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 7 384 IPR044800 GO:0003700
Vra11g1523 384 Pfam B3 DNA binding domain 201 306 IPR003340 GO:0003677
Vra11g1523 384 SUPERFAMILY DNA-binding domain 67 123 IPR016177 GO:0003677
Vra11g1523 384 MobiDBLite consensus disorder prediction 49 72 - -
Vra11g1523 384 CDD B3_DNA 200 294 IPR003340 GO:0003677
Vra11g1523 384 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 7 384 - -
Vra11g1523 384 ProSiteProfiles AP2/ERF domain profile. 68 123 IPR001471 GO:0003700|GO:0006355
Vra11g1523 384 SMART rav1_2 68 129 IPR001471 GO:0003700|GO:0006355
Vra11g1523 384 SMART B3_2 201 309 IPR003340 GO:0003677
Vra11g1523 384 CDD AP2 67 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1523 Vra-Chr11 18812741 18814278 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1523 3 384 B3 DNA Binding Superfamily AT1G25560 58.481 1.44e-144 412
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-RAV Vra11g1523 B3 2.7e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1523 K09287 - gmx:100801107 585.104