Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1514 ATGAAAAATATGCAAGGCTTCAAGACAGCACAAGCTAGTTCACAACTCTACTGCCACTCTTCCTTTTTGCTTCGGGGAAACGACGGCAACCGAAACCCCACCACCGGGTTCTGTGATTTTGGGGACCTTCACCATTCCTCTGCCGTTTTTCATCAAGAAGCTGGTGTTGATTTAGGCTCAAGTTCTATGTTTAGTGTGAAGTCAAGCAATGTTGTTGGTGGCAGTAACATGCAATATGGAACATTGAGCACGAATGTTGGGTCTTCGGAGATTGGTTCAAGTGGGGGAGGGTGCATGGATACAGGGCTGCAACTGATGTACCACAAAGGAGTGTCTATGCAAACTTTGCCTTTGGGGAATGGTCATGTTGACAATTGGGCTGATTCAGGCATAGTGGATAATAGCCAACAAACTGATGATACTTCCACAGATATTGATACTGATGATAGAATCCAATGCAATAGAGTTAAGAATGGCTCGCGTATGCTTATGCAATCCAAGGATCAGACAAAGGTCAAACCTGAAGATCAGAAGACCCTTCGGAGACTAGCTCAGAATCGAGAGGCTGCAAAGAAGAGTCGGTTAAGGAAAAAGGCGTATGTACAGCAATTGGAGAACAGCCGAGTTAAGCTTGTGCAATTAGAGCAAGAACTTCAACGAGCACGTCAACAGGGTATATTTATTGCGACTGAAGGGAATCAAGGTCATTCGGCTGTTGGAAATGGTGCCTTAGCATTTGACATGGAATATGCTCACTGGGTTGATGAACACCAACATTTGCTCAATGATCTAAGATTGGCTGTAAATTCTCAAATGAGTGATGATGAGTTACACATCCTTGTTGAAGGTGTGAGGGTACATCATAATGAGTTATTTAGGTTAAAGAGAATAGGAGCAAAGGCTGATATATTTCACATACTTAATGGAACGTGGAAAACTCCAGTGGAAAGACGTTTTATGTGGCTTGGTGGATTCCGTTCATCTGAACTGCTAAAGATCATCAAGAACCACCTTGAGCCATTGACAGAGCAGCAGTTGTTGGGCATTTGTAATTTGGAAAAATCTTCTGTCCAGTCTGAGGATGCTTTAGATAAAGGTATGGAAGCATTGCAACAATATCTTGTGGAAACACTTTCCTCCAACTCCCTTGGACCAACTGGTAATGGAAATGTTGCTGATTACATGGACCAAATGGCTCTTGCAATGGCCAAGCTTGGTGAACTAGAAGGTCTCCTTCAGCAGGCTGATCTCTTGAAGCAACATTATCTTCAACAGTTGCAACGAATTTTGACAGTACGCCAAACCGCCAGGGCATTCCTTGTCCAAAATGATTTCATTTCAAGACTAAGAGCACTTAGTTCATTATGGTTGGCACGCCCTAGAGAATAA 1389 0.4312 MKNMQGFKTAQASSQLYCHSSFLLRGNDGNRNPTTGFCDFGDLHHSSAVFHQEAGVDLGSSSMFSVKSSNVVGGSNMQYGTLSTNVGSSEIGSSGGGCMDTGLQLMYHKGVSMQTLPLGNGHVDNWADSGIVDNSQQTDDTSTDIDTDDRIQCNRVKNGSRMLMQSKDQTKVKPEDQKTLRRLAQNREAAKKSRLRKKAYVQQLENSRVKLVQLEQELQRARQQGIFIATEGNQGHSAVGNGALAFDMEYAHWVDEHQHLLNDLRLAVNSQMSDDELHILVEGVRVHHNELFRLKRIGAKADIFHILNGTWKTPVERRFMWLGGFRSSELLKIIKNHLEPLTEQQLLGICNLEKSSVQSEDALDKGMEALQQYLVETLSSNSLGPTGNGNVADYMDQMALAMAKLGELEGLLQQADLLKQHYLQQLQRILTVRQTARAFLVQNDFISRLRALSSLWLARPRE* 463
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1514 462 Pfam Seed dormancy control 261 335 IPR025422 GO:0006351|GO:0043565
Vra11g1514 462 PANTHER TRANSCRIPTION FACTOR TGA9 41 462 - -
Vra11g1514 462 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 176 220 IPR004827 GO:0003700|GO:0006355
Vra11g1514 462 Coils Coil 197 224 - -
Vra11g1514 462 SUPERFAMILY Leucine zipper domain 178 221 IPR046347 GO:0003700|GO:0006355
Vra11g1514 462 CDD bZIP_HBP1b-like 178 230 - -
Vra11g1514 462 Gene3D - 177 226 - -
Vra11g1514 462 ProSiteProfiles DOG1 domain profile. 243 459 IPR025422 GO:0006351|GO:0043565
Vra11g1514 462 SMART brlzneu 174 237 IPR004827 GO:0003700|GO:0006355
Vra11g1514 462 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 181 196 IPR004827 GO:0003700|GO:0006355
Vra11g1514 462 PANTHER BZIP FAMILY TRANSCRIPTION FACTOR 41 462 - -
Vra11g1514 462 Pfam bZIP transcription factor 177 217 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1514 Vra-Chr11 18570078 18573912 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1514 7 462 bZIP Transcription Factor Family AT1G68640 52.442 1.91e-148 429
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vra11g1514 DOG1 2.6e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1514 K14431 - gmx:100777181 688.723