Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1506 ATGGCAGTGGAATATGAAGTTGAGCATCCAAGGAAGGCTTACGGATGGGCAGCTAGGGATTCATCTGGTCTTCTCTCCCCATTTTTCTTCTCTAGAAGAAAAACAGGAGAAAAAGATGTGACATTCAAGGTGTTGTATTGTGGAATATGTCATTCCGACCTTCACAAGTTGAAGAATGATTGGAATGATTCAATTTATCCTCTTGTTCCTGGGCGTGAGATTGTTGGAGAAGTAATGGAGGTGGGAAGCAAAGTAGAAAAGTTTAAGATTGGAGACAAGGTTGCAGTGGGATGTTTGGTTGGGTCTTGTTCCTCATGCCAAAATTGTGTCAACAATCTTGAGAATTACTGCCAACAAGCGATTCACACATTTGGTTCCAAGTATGTGGATGGTAGCATTACATATGGGGGTTTCTCTGACTTCATGGTTGCAGATGAGCACTTTGTTGTCAAGATTCCAAATGGCCTACCTCTTGATGCTGCTGCACCTCTCCTTTGCGCAGGGATTACAGTCTATTCACCTTTGAGATATTTTGGCCTTGACAAACCTGGTATGCACCTCGGAGTGGTTGGCCTTGGTGGATTGGGCCATCTAGCTGTGAAGTTTGCAAAAGCCCTTGGCTTGAAAGTCACTGTCATTAGTACCTCTCCTGGTAAGGAACAAGAAGCCATTCAACATCTTGGAGCAGATTACTTTGTGTTAAGTAGAGACCAAGATCAAATGAAGGCTGCAAATTGCACCTTGGATGGTATAATCGACACTGTTTTTGCGGTTCATCCTCTAATGCCTTTGATTGATCTTTTGAAGTCTCATGGAAAGTTAGTGACAGTTGCAACACCAGAAAAACCTCTCGAGTTGTCACTTTCGTCTTTAGTTTTGGGGAGAAAAAGTATAGCGGGTAGTTACTTTGGAGGAATAAAGGAGACACAAGAAATGATAGATTTCGCAGCAGAACACAATGTTAGACCTGAAATTGAGGTTATTCCAATGGATTATGTTAACACTGCAATGGAGCGTCTACTCAAAGCTGACGTTAAATATCGTTTTGTGATTGACGTTGGCAACACATTGAAGCCCTACCCTTCTACTGCTTTCCACTGA 1101 0.4242 MAVEYEVEHPRKAYGWAARDSSGLLSPFFFSRRKTGEKDVTFKVLYCGICHSDLHKLKNDWNDSIYPLVPGREIVGEVMEVGSKVEKFKIGDKVAVGCLVGSCSSCQNCVNNLENYCQQAIHTFGSKYVDGSITYGGFSDFMVADEHFVVKIPNGLPLDAAAPLLCAGITVYSPLRYFGLDKPGMHLGVVGLGGLGHLAVKFAKALGLKVTVISTSPGKEQEAIQHLGADYFVLSRDQDQMKAANCTLDGIIDTVFAVHPLMPLIDLLKSHGKLVTVATPEKPLELSLSSLVLGRKSIAGSYFGGIKETQEMIDFAAEHNVRPEIEVIPMDYVNTAMERLLKADVKYRFVIDVGNTLKPYPSTAFH* 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1506 366 SMART PKS_ER_names_mod 23 351 IPR020843 GO:0016491
Vra11g1506 366 Gene3D - 167 323 - -
Vra11g1506 366 PANTHER CINNAMYL ALCOHOL DEHYDROGENASE-LIKE PROTEIN 1 359 - -
Vra11g1506 366 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 321 IPR036291 -
Vra11g1506 366 Pfam Zinc-binding dehydrogenase 194 317 IPR013149 -
Vra11g1506 366 PANTHER ALDEHYDE REDUCTASE 1 359 - -
Vra11g1506 366 SUPERFAMILY GroES-like 25 184 IPR011032 -
Vra11g1506 366 Pfam Alcohol dehydrogenase GroES-like domain 38 152 IPR013154 -
Vra11g1506 366 Gene3D - 16 353 - -
Vra11g1506 366 CDD CAD1 15 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1506 Vra-Chr11 18480545 18489768 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1506 11 362 Monolignol Biosynthesis Gene Families AT4G37990 67.330 2.33e-161 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1506 - - gmx:100812491 631.328