Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1504 ATGATGGCAATGGCATCAGCGTCACTCCCTTCCCCTTTCCTCTTCCTTCTCACAGCTATCTTCATGTTGCTTTACCTCTCTCTCCTCACTCACTCCGTCAACCCCGACTTCCACCCTCTAATGTCGTTCAAAGCCGCTTCCGACCCTTCCGACACACTCTCCCAGTGGAACTCCAAAACCTCAGACCCCTGCACTTGGTACGGTGTCTCTTGTCTCCGTAACCGTGTCTCTCGCCTCGTCCTTCAAGACCTAAACCTCACAGGCTCCATCCACCCTCTGACTTCTCTCACCCAACTTCGCATCCTCAGCCTAAAACGCAACCGTTTCAACGGCCCCATCACCTCTCTCGCCAACCTCACCGCCCTCCGCCTTCTCTTCCTCTCCCACAACAACTTCTCCGGTCCCTTCCCCGCCACGCTCACCTCTCTCTACCGCCTTGATCTCTCACACAACAGTCTCTCCGGCGAAATCCCCGACACTTTCAGCCGCTGGACCCACCTCCTCACCCTCCGCCTCGACTCCAACCGTTTCCGGGGCCGCATTCCCAGCAACATCAACATCTCTCGTCTTCAAGACTTTAACGTCTCAAACAACCTCCTAACGGGTCAAATACCCGAATCTCTCTCGGGTTTCCCTGGATCCGCGTTTTCTCACAACCCCTCCCTCTGCGGAGCTCCCTTGCAAGAATGCATAGCCAAAGGCGAGGCAATCATCCCGGCCCTGGCTTCCCCATTGAAGCCGCGAAACGACACTGTTTTTTCCAAACCCCGGGGGCGGGAGAGAATAATGGGGGTGTTGGTCTTGGTGGGTATTGTGGTGGGGGACGTGCTGGTGCTGGCTTTGGTGTCGCTGCTTCTTTATTGCTATTTCTGGAGGAACTACTCTGCTGCTGCACAGTTGAGAAAAGAGGAAAAAGAGAGGAGGAGTATGAAGACGGTGGATGAGTATAAGGGTGGTGGAATGGTGTTTTTGGAAGGGGTGAGGAGGTTTGAGTTAGAGGAGCTGTTGCGTTCGTCGGCGGAGTTGTTGGGAAAGGGTGCGTTGGGGAGTGCCTATAAAGCAGTGCTTGACGACGGAACTGTGGTGGCGGTGAAGAGGCTGAAGGAGGTTAGTGTTGGAGGGAAGAAGGAGTTCCATCAACGAATGGAACTGCTTGGAAGTTTGAGACACCCAAACGTTGTGAGTTTGAGGGCTTACTGTTTCACCAAACACGACAAATTCCTCGTCTCTGATTACATGTGCAACGCTAGCTTCTCATTCCTTCTCCACGGTAATCGAGGACCAGGGCGGACCCCACTGGACTGGACAACGAGGCTGAAGATCGCAGCTGGTGCGGCACGAGGCGTGGCATTCATTCACAAACATAAACTCACCCATGGAAACATCAAAGCCACCAACGTTCTTATCGACGTGGCGGGCAACGCGCGCGTCGCGGACTTTGGTCTCTCCATCTTCGCTGGCGCCTCCGTTCTAAGATCCAACGGCTACCGCGCGCCAGAGGTATCAGACGGTCGCAAGCAGACACAGATGTCTGACGTGTACTCCTTTGGCGTCCTATTGATAGAGATGCTGACTGGGAAGTGCCCCTCCACCGTGGCGGATCTCCCGAGGTGGGTCCGGTCGGTTGGGAGAGAGGAGTGGACGGCCGAGGTATTCGATTTAGAACTGATGAGCTATAAGGACATTGAGGAGGAGATGGTGGCGCTGCTACAGATAGCTATCCAGTGCACTCAGACCGAGCCTCATCAACGGCTCAGGATGAGCCACGTGGTGAAGATGATTGAGGAGTTGCGTAGGGTCCACATGTTGCCGTGTGATGAAGGGTTGGAATCGCTGTCTGGGTCACTCTCGATCCCTGAAGCAAGTGCAAGTCAATGA 1878 0.5469 MMAMASASLPSPFLFLLTAIFMLLYLSLLTHSVNPDFHPLMSFKAASDPSDTLSQWNSKTSDPCTWYGVSCLRNRVSRLVLQDLNLTGSIHPLTSLTQLRILSLKRNRFNGPITSLANLTALRLLFLSHNNFSGPFPATLTSLYRLDLSHNSLSGEIPDTFSRWTHLLTLRLDSNRFRGRIPSNINISRLQDFNVSNNLLTGQIPESLSGFPGSAFSHNPSLCGAPLQECIAKGEAIIPALASPLKPRNDTVFSKPRGRERIMGVLVLVGIVVGDVLVLALVSLLLYCYFWRNYSAAAQLRKEEKERRSMKTVDEYKGGGMVFLEGVRRFELEELLRSSAELLGKGALGSAYKAVLDDGTVVAVKRLKEVSVGGKKEFHQRMELLGSLRHPNVVSLRAYCFTKHDKFLVSDYMCNASFSFLLHGNRGPGRTPLDWTTRLKIAAGAARGVAFIHKHKLTHGNIKATNVLIDVAGNARVADFGLSIFAGASVLRSNGYRAPEVSDGRKQTQMSDVYSFGVLLIEMLTGKCPSTVADLPRWVRSVGREEWTAEVFDLELMSYKDIEEEMVALLQIAIQCTQTEPHQRLRMSHVVKMIEELRRVHMLPCDEGLESLSGSLSIPEASASQ* 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1504 625 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 30 612 - -
Vra11g1504 625 Pfam Protein kinase domain 340 592 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1504 625 ProSiteProfiles Protein kinase domain profile. 337 604 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra11g1504 625 Gene3D Transferase(Phosphotransferase) domain 1 413 605 - -
Vra11g1504 625 SUPERFAMILY Protein kinase-like (PK-like) 340 594 IPR011009 -
Vra11g1504 625 Gene3D Phosphorylase Kinase; domain 1 305 412 - -
Vra11g1504 625 Gene3D Ribonuclease Inhibitor 142 230 IPR032675 -
Vra11g1504 625 Gene3D Ribonuclease Inhibitor 39 141 IPR032675 -
Vra11g1504 625 SUPERFAMILY L domain-like 42 227 - -
Vra11g1504 625 PANTHER - 30 612 - -
Vra11g1504 625 Pfam Leucine rich repeat N-terminal domain 34 71 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1504 Vra-Chr11 18429728 18434084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1504 36 620 Receptor kinase-like Gene Family AT1G68400 57.862 0.0 639
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Vra11g1504 Pkinase 7.8e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1504 - - gmx:100810749 769.615