LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra11g1503	ATGAGTAGCAATGGCGAAACTTGTAGTGGTAGTCTCGACATTAGGGCTTTAATTTGTCACGCTGCTGCTGGTGCCTCTGCAGGGACAATAGCGGCTACATTTGTGTGCCCGTTGGATGTGATCAAGACTAGGCTACAAGTCCATGGCCTTCCTCAAGGGCAGAAAGGTAATGTCATTGTCACAAGCTTGCAAAATATAGTAAGGAACGAAGGCTTCAGGGGAATGTACCGTGGCCTTTCACCGACGATACTGGCATTACTTCCAAACTGGGCAGTTTACTTCACAAGTTATGAGCTATTAAAAGACCTGCTTCGTTCACGCGATGGTTGCAAGGAACTCACAACTTTTGGACATATGACAGCTGCTGCTGCTGCTGGGGCAGCAACAGCAATTTCTGTAAATCCATTATGGGTTGTTAAGACAAGACTTCAAACACAAGGAATGAGGCCCGATGTTGTTCCTTACAAGAGTGTTCTGTCTGCTCTGACAAGGATTACACGTGAGGAAGGCATAAGAGGCCTATATAGTGGCATTATTCCTTCATTGGCTGGCATAAGTCATGTTGCAATTCAATTTCCAGCATTTGAAAGGATCAAGTCATACATGGCAGAAAAAGATAACACAACTGTTGATAAGCTAAGTCCTGGAAATGTTGCCATTGCATCATCAATTTCAAAAGTGTTTGCCTCTGTAATGACTTATCCACATGAGGTAATACGATCTCGGCTGCAAGAGCAAGGGCAGGCCAAAAATAACGGGATACAATATACAGGGGTTATTGACTGTACCAAGAAGTTGTTTCAAAAGGAAGGCATTGCTGGGTTTTATCGTGGTTGTGCAACAAATCTTTTAAGAACAACTCCATCTGCTGTTATTACATTCACTAGTTATGAGATGATACAAAGGTTTTTGCAGCGAGTTGTACCACAGGAACCCAATGAACTGAACAAAGCTGAGTCAAAAGCAGAAGGCAGTGGCACTGATAGGGGACAACCACCGTCTCAGTCTAACATGAAAGCTTCTTCTATTCCTCTCGGAAACAAAGAGCAGCTAACACGACATTGA	1065	0.4357	MSSNGETCSGSLDIRALICHAAAGASAGTIAATFVCPLDVIKTRLQVHGLPQGQKGNVIVTSLQNIVRNEGFRGMYRGLSPTILALLPNWAVYFTSYELLKDLLRSRDGCKELTTFGHMTAAAAAGAATAISVNPLWVVKTRLQTQGMRPDVVPYKSVLSALTRITREEGIRGLYSGIIPSLAGISHVAIQFPAFERIKSYMAEKDNTTVDKLSPGNVAIASSISKVFASVMTYPHEVIRSRLQEQGQAKNNGIQYTGVIDCTKKLFQKEGIAGFYRGCATNLLRTTPSAVITFTSYEMIQRFLQRVVPQEPNELNKAESKAEGSGTDRGQPPSQSNMKASSIPLGNKEQLTRH*	355

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra11g1503	354	MobiDBLite	consensus disorder prediction	311	354	-	-
	Vra11g1503	354	SUPERFAMILY	Mitochondrial carrier	18	299	IPR023395	-
	Vra11g1503	354	MobiDBLite	consensus disorder prediction	327	354	-	-
	Vra11g1503	354	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	213	303	IPR018108	-
	Vra11g1503	354	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	15	103	IPR018108	-
	Vra11g1503	354	PANTHER	NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1, CHLOROPLASTIC	13	314	-	-
	Vra11g1503	354	Gene3D	Mitochondrial carrier domain	110	317	IPR023395	-
	Vra11g1503	354	Gene3D	Mitochondrial carrier domain	6	109	IPR023395	-
	Vra11g1503	354	PANTHER	MITOCHONDRIAL NICOTINAMIDE ADENINE DINUCLEOTIDE TRANSPORTER 1-RELATED-RELATED	13	314	IPR044712	GO:0006862\|GO:0055085
	Vra11g1503	354	Pfam	Mitochondrial carrier protein	213	306	IPR018108	-
	Vra11g1503	354	Pfam	Mitochondrial carrier protein	112	204	IPR018108	-
	Vra11g1503	354	Pfam	Mitochondrial carrier protein	20	106	IPR018108	-
	Vra11g1503	354	PRINTS	Mitochondrial carrier protein signature	20	33	IPR002067	GO:0055085
	Vra11g1503	354	PRINTS	Mitochondrial carrier protein signature	33	47	IPR002067	GO:0055085
	Vra11g1503	354	PRINTS	Mitochondrial carrier protein signature	78	98	IPR002067	GO:0055085
	Vra11g1503	354	PRINTS	Mitochondrial carrier protein signature	128	146	IPR002067	GO:0055085
	Vra11g1503	354	PRINTS	Mitochondrial carrier protein signature	222	244	IPR002067	GO:0055085
	Vra11g1503	354	ProSiteProfiles	Solute carrier (Solcar) repeat profile.	113	201	IPR018108	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra11g1503	Vra-Chr11	18419521	18424089	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra11g1503	1	348	Chloroplast and Mitochondria Gene Families	AT1G25380	62.466	1.81e-147	419

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra11g1503	K15115		-	gmx:100797064	588.571