Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1491 ATGAGACCAGAAAATAACCCTTTGGATCTCAACAACCTTCCCGATGACTACTCCAGAGATGGCAATCAACTCTTCCAAGACACTTTCTCTTCGGAAGGATATCAGAGAAACAAAGACAGTATGAAGGATGATGAGAGTGAGAAGGTCTACGAGTGTAGATTTTGTTCCCTCAAGTTCTTCAAATCACAGGCTCTTGGGGGACACATGAACCGTCACCGACAAGAGAGGGAAACAGAGACACTGAACCATGCTCGTCAGCTGGTCTACCGTAACGATCATAGCCTAAGCACTCAACCCGCCCCCAACCTAGGATGCTGTCAACCAATAGCATCAGGGGGCTATCATCCTGCAAGTAGCATGGGAGACCCAACAATGCATGCAAGGTTCCCAAGATACATATCGGGTTCGGGTTCGGGTTCAGGTTCATCTTCGTTCCATGTACCAACTCCACCACCCCAGCTGCAACTGCATCAACCATCTCAGCATCATCTTTTGATAGCCTCACCTCCGACACCACCCCTTCCTTTTCCACGAGCTTCGTATTCTCAGCAGCATCATCATGCAGTGAACGACTACTATGTGGGTCATGTTCTGGGCAGCAGCACCAAGAATCACGTCCTGAATGACTGCACTTGCATCGGGGCACCCGTAGGACAAACATTGGTGGGTGGTGGCAAAGACAGGTCACTGCAGACTCCTCAGGGGGATTCGTTGAATTGGGGACGGGGCTATGCAGGAACACGGCAGCTATTGGATACTCCTTCAGCGATAAATCGGTGTCACGAAGGGTTTCAATGA 798 0.5 MRPENNPLDLNNLPDDYSRDGNQLFQDTFSSEGYQRNKDSMKDDESEKVYECRFCSLKFFKSQALGGHMNRHRQERETETLNHARQLVYRNDHSLSTQPAPNLGCCQPIASGGYHPASSMGDPTMHARFPRYISGSGSGSGSSSFHVPTPPPQLQLHQPSQHHLLIASPPTPPLPFPRASYSQQHHHAVNDYYVGHVLGSSTKNHVLNDCTCIGAPVGQTLVGGGKDRSLQTPQGDSLNWGRGYAGTRQLLDTPSAINRCHEGFQ* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1491 265 ProSiteProfiles Zinc finger C2H2 type domain profile. 50 77 IPR013087 -
Vra11g1491 265 PANTHER ZINC FINGER PROTEIN JAGGED 1 228 IPR045320 GO:0003700
Vra11g1491 265 PANTHER ZINC FINGER PROTEIN JAGGED 1 228 IPR031113 GO:0007275
Vra11g1491 265 Gene3D Classic Zinc Finger 30 100 - -
Vra11g1491 265 MobiDBLite consensus disorder prediction 1 43 - -
Vra11g1491 265 SUPERFAMILY beta-beta-alpha zinc fingers 46 78 IPR036236 -
Vra11g1491 265 MobiDBLite consensus disorder prediction 16 35 - -
Vra11g1491 265 ProSitePatterns Zinc finger C2H2 type domain signature. 52 72 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1491 Vra-Chr11 18251653 18254354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1491 4 92 C2H2 Transcription Factor Family AT1G13400 61.538 7.50e-29 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1491 - - vra:106776856 520.005