Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1489 ATGGGGCAAGGGAATCCAGATCCTCGTGTGGATGCAAATGCAAATCCCAGTCACGAAGAAACACAATCTTTAGATTCCGGTTGTGTTCAAAGAGTGAAAAAGAAGCCCGGCAGAAAAAGTAAAAAGGATAAGCAAGAAATGAGAAAGAAGAAAATGTCAGATGCTGCTGACGAGGAGGGTGGGGTTTCTGTGCAGAGACCAAGTAGGAAAAGAAAGAAGGACGATGGGAATGGTGAGCTTCAAATGTCTGGCGCTGAGGAACCATATGGTCTTAGGGGTTGTAACGAAGAGATGATGTCAAAAGGCATCAAGAAAAGTGCTAAGGATTGTGAAAATGGGCGCTTAAATTGCCACCAATGTAAGAGAAACGATAAAGGTCGTGTTGTAGGGTGCTCGCACTGTAAAAAAAAATTTTGCCTACTCTGCTTAAAAGTTTGGTATCCTCATTTGAAAGAGAAGGATATTGCTAAGGCATGTCCTGGGTGCCGTGGTAATTGCAATTGCAAAGCATGCCTGAGTTCTGTTCAACTTATTAATAAAATGAAGAAAAAGGCTACAGAAGATGAGGGTGAGAAGGTTGAACACTCTTTGTATTTGCTGCAAGTACTTCTTCCGTTTTTAAGGCAGCTTGATGAAGAACAGATGATTGAGAAAGAGACAGAAGCTAAGATACAAGGGCTCCCAGTCTCCGAGCTAAATATATTTAAGGCAGATTTCTCTTTAGAAGAGCGTGTGTACTGTGACAACTGCAAAACTTCAATATTCGATTACCACAGAAGCTGCACAAAATGCTCTTTTGACCTTTGTCTCATCTGTTGCCGTGAGCTTCGTAGTGGGCAGCTTGTAGGTGGAGCAGATCCAATAGTGTTGGAGTTTGTTTGCAAAGGACGTGAATACTTGCATGGTGAAAAAGAAATTGAAGTGGTAAACCAAATTGCATCAGATGCTGGTGCTAAGCCTGAGGTTCACGAATGGTCAAGATCCAGGTGGCATTCCCATAATAATGGTAGCATTCCTTGTCCAAAAGTCAACAATGAATGCAACCATGGCTTTCTTGAACTGAGAAGTATATTAGGTCAACATTTTATCTCTGAGTTAGTTTGTAAAGGGAAAGAACTTGTGCAGGCATACAAGATTCAGAATGTATTTAAGCCCCCTGACAGCTTCTGTTCGTGTTTGGGGCTGGATAGAAACACAGATGTTAGGAATAGTAATATGAGGAAGGCTGCTTCTCGTGATAATTTAGCTGACAACTATTTATACTGTCCTAAGGCTGTAGATCTACAGGACAAGGATTTAAATCATTTTCAGTGGCACTGGGAAAAGGGGGAACCTGTCATTGTCAGCAATGTGCTTGAGTGCACTTCTGGTTTAAGCTGGGAACCTCTTGTCATGTGGCGTGCATTACGTCATGTAGCTAGTGGTACCCAACGTGGTCAACATTTGGATGTGGAAACAATTGATTGCTTAGACTGGTGTGAGGGGGGAATTAATATCCACCAATTCTTTACTGGGTATACAGAAGGTCGAATGGATTGGCGTGGTTGGCCTCAAATTTTGAAATTAAAGGATTGGCCACCTTCTAATTTATTTGAGGAACAATTGCCTCGTCATTGTGCTGAGTTCATATCATCCTTACCCTTCAAGGAATATACTGATCCTCTCAGAGGTGCTCTTAACCTTGCTGTGAAGTTGCCTGAGGGTTCTCTAAAGCCAGACATGGGGCCAAAGTCTTATATTGCTTATGGATTTCCTTCAGAGCTCGGGCGTGGTGATTCTGTTACTAAGATCCATTGTGACATGTCAGATGCAGTAAATGTTTTGACCCACATTGCTGAAGTGAAATGGAATTCTGAGCAACTTACTGCCATTGAGGAGTTGAAACAAAAGCATTTTGAACAAGACAAAAGAGAGTTATGTGGTAATGATCATGATGTAGAAACTAATACTGACATGCTTAATAATTCGTCTTCTACCATAAATGTTTTGGACAACCAGAATACTGTTCAACTCATTGAACATGAAGGTGGATTATGTGATCAGAGTGCAGTCAATCAGTTTCATCAATCTGGTAATAGTGAGATTGCCACTGCTAGGGAGGATGGTCTTTTATGTGAGTCAGAAGTCAAAGAGGTTGACAAAGTGGACACAAAACTAAAAAATGATTTGTTTGGGGGGGATGCTGCTGAAGGTGCTCTCTGGGATATTTTTCGGAGGCAGGATGTATCTAAATTGCAAGAATATCTGAAGAAGCATTTCCGAGAGTTCAGGCATGTCCATTGCTGCCCCTTAAATCAGGTTATTCACCCCATTCATGACCAGACTTTTTATCTGACTATGGAGCATAAGAGGAAGCTTAAGGAGGAGTATGGAATTGAGCCCTGGACTTTTATTCAGAAGTTAGGAGATGCTGTTTTTATTCCTGCTGGTTGTCCTCACCAAGTCAGAAATCTGAAGTCATGTATAAAAGTTGCGCTGGATTTTGTGTCCCCTGAAAATGTTGGAGAGTGCTTTCGGTTGACAGAAGAATTTCGCACACTTCCAATAAATCACAAGTCCACAGAGGACAAATTGGAGATAAAGAAAATGACAGTATTTGCAATTCAAGATGTCGTTGAAAAGTTGGAGAAATCAAGGTTAGAGATTGCAGACATCTGA 2658 0.4135 MGQGNPDPRVDANANPSHEETQSLDSGCVQRVKKKPGRKSKKDKQEMRKKKMSDAADEEGGVSVQRPSRKRKKDDGNGELQMSGAEEPYGLRGCNEEMMSKGIKKSAKDCENGRLNCHQCKRNDKGRVVGCSHCKKKFCLLCLKVWYPHLKEKDIAKACPGCRGNCNCKACLSSVQLINKMKKKATEDEGEKVEHSLYLLQVLLPFLRQLDEEQMIEKETEAKIQGLPVSELNIFKADFSLEERVYCDNCKTSIFDYHRSCTKCSFDLCLICCRELRSGQLVGGADPIVLEFVCKGREYLHGEKEIEVVNQIASDAGAKPEVHEWSRSRWHSHNNGSIPCPKVNNECNHGFLELRSILGQHFISELVCKGKELVQAYKIQNVFKPPDSFCSCLGLDRNTDVRNSNMRKAASRDNLADNYLYCPKAVDLQDKDLNHFQWHWEKGEPVIVSNVLECTSGLSWEPLVMWRALRHVASGTQRGQHLDVETIDCLDWCEGGINIHQFFTGYTEGRMDWRGWPQILKLKDWPPSNLFEEQLPRHCAEFISSLPFKEYTDPLRGALNLAVKLPEGSLKPDMGPKSYIAYGFPSELGRGDSVTKIHCDMSDAVNVLTHIAEVKWNSEQLTAIEELKQKHFEQDKRELCGNDHDVETNTDMLNNSSSTINVLDNQNTVQLIEHEGGLCDQSAVNQFHQSGNSEIATAREDGLLCESEVKEVDKVDTKLKNDLFGGDAAEGALWDIFRRQDVSKLQEYLKKHFREFRHVHCCPLNQVIHPIHDQTFYLTMEHKRKLKEEYGIEPWTFIQKLGDAVFIPAGCPHQVRNLKSCIKVALDFVSPENVGECFRLTEEFRTLPINHKSTEDKLEIKKMTVFAIQDVVEKLEKSRLEIADI* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1489 885 Pfam JmjC domain, hydroxylase 732 828 IPR003347 -
Vra11g1489 885 ProSiteProfiles Zinc finger RING-type profile. 117 163 IPR001841 -
Vra11g1489 885 SUPERFAMILY Clavaminate synthase-like 432 863 - -
Vra11g1489 885 SMART cupin_9 535 845 IPR003347 -
Vra11g1489 885 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 32 877 IPR045109 GO:0032454|GO:0033169
Vra11g1489 885 Gene3D Cupin 415 854 - -
Vra11g1489 885 ProSiteProfiles JmjC domain profile. 554 845 IPR003347 -
Vra11g1489 885 MobiDBLite consensus disorder prediction 47 80 - -
Vra11g1489 885 MobiDBLite consensus disorder prediction 1 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1489 Vra-Chr11 18225164 18236800 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vra11g1489 JmjC 2.6e-14 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1489 K15601 - gmx:100797799 1324.3