Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1482 ATGGACAATGATGTGTTGGGTATTCTCAAACTTCGAATCATAAAAGGAATTGATCTTGCAATTCGTGATTCTCGTGCAAGTGATCCTTATGTCGTCGTCATAATGGGTGATCAGAAGCTGAAGACGCGTGTTATAAAAAACAACTGCAATCCTACGTGGGATGAAGAAATGACCCTTTACGTAAAGGATGTTAATACCCCATTACATCTGACAGTTTATGACAAAGACACTTTCACTGTGGATGACAAAATGGGTGAGGCAGAAATAGACTTCATACCCTTTCTTAAGTGTAAGAAGATGGAATTGAAAAACCTCCCAAATGGTTGTGCAGTGAAGAGGATCCAACCAAATAGAAGTAATTATCTTGCTGAAGAGAGCAGTTGTGTTTGGAATGATGGTGATATTGTTCAAAAAATGATTTTGAGATTGAAAAATGTTGAGAGGGGTGAACTGGTTGTGCAAATTCAGTGGGTTGATGTTGTTGGTTTCAGGGGCTTATCACATATAAAACTTTGA 516 0.3818 MDNDVLGILKLRIIKGIDLAIRDSRASDPYVVVIMGDQKLKTRVIKNNCNPTWDEEMTLYVKDVNTPLHLTVYDKDTFTVDDKMGEAEIDFIPFLKCKKMELKNLPNGCAVKRIQPNRSNYLAEESSCVWNDGDIVQKMILRLKNVERGELVVQIQWVDVVGFRGLSHIKL* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1482 171 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 10 4 163 - -
Vra11g1482 171 Gene3D C2 domain 3 163 IPR035892 -
Vra11g1482 171 Pfam C2 domain 7 92 IPR000008 -
Vra11g1482 171 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 7 95 IPR035892 -
Vra11g1482 171 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 4 163 IPR044562 -
Vra11g1482 171 ProSiteProfiles C2 domain profile. 1 104 IPR000008 -
Vra11g1482 171 SMART C2_3c 8 103 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1482 Vra-Chr11 18132564 18136047 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1482 39 168 C2H2 Transcription Factor Family AT1G70790 62.121 7.85e-57 173
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1482 - - gmx:100792328 259.61