Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1481 ATGGACAATAGTATTCTGGGTCTTCTCAAACTTCGAATTAAAAGAGGTACTGATCTTGCAATTCGCGATGCCATTAAAGGACGTGCCAGTGACCCTTATGTCGTCGTCAGCATGGGCGATCAGAAGCTGAAGACTTCCGTTAAAAAAAACAACTGCAATCCTGAGTGGAATGAAGAAAGGACTCTTTCTATAAAGGACGTTACAACCCCCATACGTTTGTCAGTTTATGACAAAGACACATTCTCAGGGGATGACAAAATGGGAGATGCAGACATAGACTTAATACCATATGTTCAGTGTGTGCAAATGAGATGGACTGACCTTCGAAATGGTACTGTAGTGAGGATCGTTCAACCAGATGAAACTAATTGCCTTGCCAAAGATAGCAACTGCATTTGGCAAAATGAAAACATCATTCAAGAAATGGTTTTGAAATTGAGAAATGTTGAGAGTGGGGAAATAGTTGTGGAAATAGAGTGGGTTGATGTTATTGGTTGCAAGGGCTTATCACATCTAGATCTTTAA 525 0.4019 MDNSILGLLKLRIKRGTDLAIRDAIKGRASDPYVVVSMGDQKLKTSVKKNNCNPEWNEERTLSIKDVTTPIRLSVYDKDTFSGDDKMGDADIDLIPYVQCVQMRWTDLRNGTVVRIVQPDETNCLAKDSNCIWQNENIIQEMVLKLRNVESGEIVVEIEWVDVIGCKGLSHLDL* 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1481 174 PANTHER CALCIUM-DEPENDENT LIPID-BINDING (CALB DOMAIN) FAMILY PROTEIN 4 171 - -
Vra11g1481 174 Pfam C2 domain 8 95 IPR000008 -
Vra11g1481 174 PANTHER PROTEIN C2-DOMAIN ABA-RELATED 4 4 171 IPR044562 -
Vra11g1481 174 Gene3D C2 domain 5 167 IPR035892 -
Vra11g1481 174 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 6 160 IPR035892 -
Vra11g1481 174 ProSiteProfiles C2 domain profile. 1 110 IPR000008 -
Vra11g1481 174 SMART C2_3c 8 106 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1481 Vra-Chr11 18123621 18129973 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1481 42 171 C2H2 Transcription Factor Family AT1G70790 56.061 9.09e-50 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1481 - - gmx:100784381 275.404