Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1469 ATGGCTTCCAAGCCCCGAACAGTTGAAGAGATCTTCAAGGATTTTAGAGCCCGAAGAAACGCTATTATTCGCGCACTCACTCATGACGTTGATGAATTTTACGGACTCTGTGATCCAGGTAAGGATAACTTGTGCCTCTATGGACATCCAAACGGGGCCTGGGAGGTAGCTCTGCCATCGGAGGAAGTTCCACCGGAGCTCCCTGAGCCAGCTCTTGGAATCAATTTTGCCAGGGACGACCTGAGCCGCAAGGACTGGCTTTCTCTGGTTGCCGTGCATAGTGATTCATGGCTGCTTGCAGTGGCCTTTTACCTTGGAACTCGGCTTAACCACAACGAAAGAAAACGCCTATTTGGTTTGATCAATGCTCTTTCCACTGTTTTTCAAGTTGCTACTGGCAATAAACCAATTAAGGAGAAGCTGACAATGGATAGCGGAAGCAAATCTGATGGAGCCATGATGAAAGGTGAGCCTATTAAAATATTTTGTGGAAGCTGTGGTGGAAAATACACTGGAGATGAACTTTGGATCGGTTGTGATATATGTGAGTGGTGGTACCATGGGAGGTGCGTTATGATTAACCCTGCAAAGGCTGACACCCTAAAGCGCTATAAATGTCCAGCATGCAGCTTGAGGAGGAGCAGGTCAAAGACTGAAGACAATGAAATGGGAATAAGTGACTCAGATGAACCTTGTTTCATGGCTGACAAGATCACAAGATAG 723 0.4661 MASKPRTVEEIFKDFRARRNAIIRALTHDVDEFYGLCDPGKDNLCLYGHPNGAWEVALPSEEVPPELPEPALGINFARDDLSRKDWLSLVAVHSDSWLLAVAFYLGTRLNHNERKRLFGLINALSTVFQVATGNKPIKEKLTMDSGSKSDGAMMKGEPIKIFCGSCGGKYTGDELWIGCDICEWWYHGRCVMINPAKADTLKRYKCPACSLRRSRSKTEDNEMGISDSDEPCFMADKITR* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1469 240 ProSiteProfiles Zinc finger PHD-type profile. 160 212 IPR019787 -
Vra11g1469 240 CDD PHD_AL_plant 162 212 IPR044104 -
Vra11g1469 240 PANTHER CPG BINDING PROTEIN 160 215 IPR045104 GO:0006355|GO:0042393
Vra11g1469 240 PANTHER CPG BINDING PROTEIN 2 155 IPR045104 GO:0006355|GO:0042393
Vra11g1469 240 Pfam PHD-finger 162 210 IPR019787 -
Vra11g1469 240 Pfam Alfin 7 132 IPR021998 GO:0006355|GO:0042393
Vra11g1469 240 SMART PHD_3 162 210 IPR001965 -
Vra11g1469 240 SUPERFAMILY FYVE/PHD zinc finger 161 215 IPR011011 -
Vra11g1469 240 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 1-LIKE 2 155 - -
Vra11g1469 240 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 1-LIKE 160 215 - -
Vra11g1469 240 ProSitePatterns Zinc finger PHD-type signature. 163 209 IPR019786 -
Vra11g1469 240 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 160 210 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1469 Vra-Chr11 17923846 17927559 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1469 2 216 Alfin-like Transcription Factor Family AT5G05610 61.181 7.91e-91 266
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Vra11g1469 Alfin 4.8e-62 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1469 - - vra:106776977 497.278