Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1468 ATGGAGAAAGATCACAACTATTCGGCACCACTATCCATGCCTCCAAGCTTCAACACACTTGACTACTCTCTAGATCACGACCAAAACCACCTTTATCCACCAAATCACCATCAACAGCAGCTCATGAAGTTCCAAGCTTCTGCTGATCAAAACAATAATGGATCAATGGTGGATTACATGCCTCAAACACCACCAACACCACCACCACCACATGGTTTTTATGCTGCTTCTAACACTGCCACAATATCCTATGATAAATTGAGTTTTGCAGACGTGATGCAGTTTGCGGATTTTGGACCTAAGTTGGCTTTGAATCAAACAAAAAGCTGCGAAGAATCTGGGTTAGATCCAGTTTACTTTCTCAAGTTTCCAGTGTTAAACGACAAGATGGAGGAAGAGCAGACTCTGATGGTGAATGAGGACCCCGATGGTGAAGCAGAAAATCACGATGAGAGGTTCAACTTGGTGGATGTGGAGGAGAAGTCAAGGGTTGGTGAAGAGGGAATGATGATGAGAGAAGATGAAGAGACTCGGCTTTCTGATGACAACAACAATTCCGTGCAGATTCGGTTTCTTGGTCAGGAAGAGACTCAGAAGAATGCAGGAGTGCAGGAAAACAAGAACAAGAGGAAGAGACCAAGAACTGTTAAGACAAGTGAGGAAGTTGAGAGCCAGCGCATGACCCACATAGCAGTTGAAAGGAATCGAAGGAAGCAAATGAATGAGCATCTTCGTGTTCTTAGATCACTCATGCCTGGTTCATATGTTCAAAGGGGTGATCAAGCTTCTATAATTGGGGGAGCTATAGAGTTTGTGAGGGAATTAGAGCAACTTCTTCAGTGTTTGGAGTCACAAAAGAGGAGGAGGGTACTGGGAGAAGCTCAAGCAAGACAAGTTGGGGAACCCTCCATTGCACAACAACAACCTCCTTTCTTTCCACCTTTGGCAATTCCGAACGAGCAGATGAAGCTGGTGGAGTTGGAGAGTGGACTTCGTGAAGAAACAGCAGAGAGCAAGTCATGTTTGGCTGATGTTGAAGTCAAGCTTCTAGGATTTGATGCCATGATCAAAATCTTATCAAGGAGGAGGCCAGGACAGTTGATCAAAACCATTGCTGCACTCGAAGATCTGCAACTAATAATCCTTCACACCAACATCACCACCATTGAACAGACAGTTCTTTATTCATTCAATGTCAAGGTGGCTAGTGATTCAAGGTTCACCGCAGAAGATATAGCCAGTTCGGTGCAGCAGATATTCAATTTTATCCATGCAAACACTAGCATGTGA 1290 0.4419 MEKDHNYSAPLSMPPSFNTLDYSLDHDQNHLYPPNHHQQQLMKFQASADQNNNGSMVDYMPQTPPTPPPPHGFYAASNTATISYDKLSFADVMQFADFGPKLALNQTKSCEESGLDPVYFLKFPVLNDKMEEEQTLMVNEDPDGEAENHDERFNLVDVEEKSRVGEEGMMMREDEETRLSDDNNNSVQIRFLGQEETQKNAGVQENKNKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRVLGEAQARQVGEPSIAQQQPPFFPPLAIPNEQMKLVELESGLREETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKTIAALEDLQLIILHTNITTIEQTVLYSFNVKVASDSRFTAEDIASSVQQIFNFIHANTSM* 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1468 429 PANTHER TRANSCRIPTION FACTOR FAMA 38 429 - -
Vra11g1468 429 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 224 290 IPR036638 GO:0046983
Vra11g1468 429 MobiDBLite consensus disorder prediction 202 226 - -
Vra11g1468 429 CDD bHLH_AtFAMA_like 227 294 - -
Vra11g1468 429 Pfam Helix-loop-helix DNA-binding domain 225 276 IPR011598 GO:0046983
Vra11g1468 429 MobiDBLite consensus disorder prediction 50 72 - -
Vra11g1468 429 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 224 275 IPR011598 GO:0046983
Vra11g1468 429 PANTHER TRANSCRIPTION FACTOR FAMA 38 429 IPR044283 GO:0003700|GO:0010052
Vra11g1468 429 MobiDBLite consensus disorder prediction 194 226 - -
Vra11g1468 429 Gene3D - 215 289 IPR036638 GO:0046983
Vra11g1468 429 SMART finulus 230 281 IPR011598 GO:0046983
Vra11g1468 429 CDD ACT_UUR-ACR-like 355 419 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1468 Vra-Chr11 17912034 17915229 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1468 46 429 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 59.277 1.69e-150 431
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra11g1468 HLH 9.3e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1468 - - pvu:PHAVU_003G033900g 730.709