Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1452 ATGGGAAAAGAGATTTCCGATTCTGATTCCCATCACAAACGTCTTGGTCTTTTAAAAGATCAAGTTCACTTGGTTAAAAGGAAAGACTGTGATCGCCATGAAATTGCTCCAATCCAAGACCAACTATCCTTTGAGAAGGGTTTTTTCATTGTAATTCGTGCATGCCAATTGTTAGCACAAAAGAATGATGGAATAGTATTGGTAGGGGTGGCAGGTCCTTCCGGAGCAGGCAAGACTGTTTTTACTGAAAAGATACTCAACTTCATGCCCAGCATTGCTGTCATTTCAATGGATAATTACAATGATTCCAGTCGAATTGTTGACGGCAACTTTGATGATCCACGCTTAACAGACTATGACACGTTACTTCAGAATTTACATGATTTAAAGGAAGGAAAGCCTGTTCAAGTTCCCATATATGATTTCAAGTCCAGTTCACGAACAGGATACAGGACAGTAGAAGCTCCAACTTCTCATATCGTGTTTATAGAGGGCATCTATGCCTTGAGTGAAAAGTTACGACCTCTACTGGACCTTCGAGTCTCTGTTACGGGAGGAGTTCACCTTGACCTTGTAAAACGAGTTATACGTGATATTCAACGTGCTGGTCAAGAACCTGAAGAAATTATTCATCAAATATCTGAGACGGTGTATCCCATGTACAAGGCCTTTATTGAGCCAGATCTCCAAACAGCACATATAAAAATCATCAACAAATTCAATCCATTTACTGGATTCCAGAGCCCAACTTACATATTAAAGTCAGCAAAGAATCTAGCAGTGGATCAAATTAAAGCTGTTCTCTCTGAGGATTTTAAGGAAACAACAGAGCAAACTTATGACATATATCTTCTACCACCTGGTGAAGATCCGGAAACTTGCCAATCATATTTGCGCATGCGAAATAAGGATGGGAAATACAGTCTCATGTTTGAGGAATGGGTGACTGATAATCCATTTGTCATATCACCAAGAATTACTTTTGAGGTTAGTGTGCGCCTTCTTGGTGGACTAATGGCCTTGGGGTACACAATAGCCACTATCCTTAAGAGAAACAGCCATGTTTTCTCTGATGATAGGGTTTGTGTGAAATTGGATTGGCTTGAGCAACTCAATAGACATTATGTTCAGGTACAAGGAAGAGATCGCTTGGTTTTACAATACATAGGACAGCAGCTAGGTCTAGATGGTTCCTACATTCCTCGTACCTACATTGAGCAAATTCAAATTGAAAAGCTTGTGGACGAGGTTATGGCCCTACCAGAGGATTTGAAGACAAAACTCAGCCTAGATGAGGATTTGGTGTCAAGCCCCAAAGAAGCACTTTCTAGAGCCTCTGCTGACAGAGTTGCCATGAGAAATAAACATCTGAGGAGTGGAATATCACAGTCATATACCAATCAAAGAGACAAAAACCTTGCTAAGGTTACTGGATATGATTCCAACAATAGAAGGTTTGGTGAAAGAAATTCAGAGTCCAGCACAATGTCAGTGAATCAGGGAGCAATCAATCAACTTTCCGACCAAATTTCTGCCCTCAATGATAGAATGGACGAGTTTACAAATCGCATTGAAGAGCTAAATTCCAAATTAAACACCAAGAGAAATTCTCCAAGCCAACAGAATATGTCACTTCAAACTGAGACATGCAATGGATCAGCTCCCACCTCATACTTCATCACTAGTTTGGGCAATGGTTCCCTAACTGGATCTAAAATGGCAAATTCCTCTTCATCATCCCAGTTAAATAAGGACTCTCCTGTAATGGAAGAGATATCAAGCATTGCACGCAGTCAGCGTCAGATCATGCATCAATTGGACAATCTGAATAATCTTCTGAGGGGTAGCTCAGGGGAGAAGTCTCAGCAAACAAGAACTAACCGGAGAAGCATAGATAGGACAGCAGATTCCATGGGAACCTCTGTTATGGCAGTGGTGGCAGTTGGTTGTTTGGGGATCTTCTTGATGAAGGGTTTGTTGAACCGTAATTGA 1992 0.4096 MGKEISDSDSHHKRLGLLKDQVHLVKRKDCDRHEIAPIQDQLSFEKGFFIVIRACQLLAQKNDGIVLVGVAGPSGAGKTVFTEKILNFMPSIAVISMDNYNDSSRIVDGNFDDPRLTDYDTLLQNLHDLKEGKPVQVPIYDFKSSSRTGYRTVEAPTSHIVFIEGIYALSEKLRPLLDLRVSVTGGVHLDLVKRVIRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKIINKFNPFTGFQSPTYILKSAKNLAVDQIKAVLSEDFKETTEQTYDIYLLPPGEDPETCQSYLRMRNKDGKYSLMFEEWVTDNPFVISPRITFEVSVRLLGGLMALGYTIATILKRNSHVFSDDRVCVKLDWLEQLNRHYVQVQGRDRLVLQYIGQQLGLDGSYIPRTYIEQIQIEKLVDEVMALPEDLKTKLSLDEDLVSSPKEALSRASADRVAMRNKHLRSGISQSYTNQRDKNLAKVTGYDSNNRRFGERNSESSTMSVNQGAINQLSDQISALNDRMDEFTNRIEELNSKLNTKRNSPSQQNMSLQTETCNGSAPTSYFITSLGNGSLTGSKMANSSSSSQLNKDSPVMEEISSIARSQRQIMHQLDNLNNLLRGSSGEKSQQTRTNRRSIDRTADSMGTSVMAVVAVGCLGIFLMKGLLNRN* 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1452 663 Gene3D - 66 245 IPR027417 -
Vra11g1452 663 PRINTS Uridine kinase signature 65 82 - -
Vra11g1452 663 PRINTS Uridine kinase signature 132 147 - -
Vra11g1452 663 PRINTS Uridine kinase signature 188 198 - -
Vra11g1452 663 PRINTS Uridine kinase signature 224 237 - -
Vra11g1452 663 Pfam CYTH domain 253 404 IPR023577 -
Vra11g1452 663 Coils Coil 503 537 - -
Vra11g1452 663 Gene3D - 254 412 - -
Vra11g1452 663 MobiDBLite consensus disorder prediction 531 551 - -
Vra11g1452 663 Pfam Phosphoribulokinase / Uridine kinase family 68 236 IPR006083 GO:0005524|GO:0016301
Vra11g1452 663 SUPERFAMILY CYTH-like phosphatases 265 407 IPR033469 -
Vra11g1452 663 CDD UMPK_like 67 239 - -
Vra11g1452 663 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 236 IPR027417 -
Vra11g1452 663 ProSiteProfiles CYTH domain profile. 248 410 IPR023577 -
Vra11g1452 663 MobiDBLite consensus disorder prediction 529 551 - -
Vra11g1452 663 MobiDBLite consensus disorder prediction 478 498 - -
Vra11g1452 663 PANTHER URIDINE KINASE 5 655 - -
Vra11g1452 663 MobiDBLite consensus disorder prediction 612 634 - -
Vra11g1452 663 PANTHER PHOSPHORIBULOKINASE/URIDINE KINASE-LIKE PROTEIN 5 655 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1452 Vra-Chr11 17712241 17729135 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1452 67 236 PRT Gene Family AT5G40870 28.177 7.12e-17 82.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1452 K00876 - gmx:100797542 1175.23