Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra11g1450 ATGGCTGTGGATTCACCGATTTCGTGCCCATTGGGTCCACCGGCGTGCGACAAGGACGCGAAGGCGCTGCAGTTCATCGAGGAAATGACCCGAAACGCCGACGCCGTCCAAGAGAGGGTGCTGGCGGAGATTCTCACACGCAACGCTAACACAGAGTACCTTAAACGCTTCGAACTCGGAGGCGCCTCCGATCGTCAAACCTTCAAGTCTAAGGTTCCCGTTATCTCTTACGAGGATGTGAAGTCCGAAATTCAACGTATCGCGAACGGTGATTGCTCCCCTATCTTGTCCGCTCATCCTATCTCTGAATTTCTCACCAGTTCTGGAACTTCAGCAGGGGAAAGAAAATTGATGCCAACAATTAAGGAAGAACTGGATCGTCGCCAACTTCTATACAGCCTCCTAATGCCAGTTATGAACCTTTATGTGCCGGGTTTGGACAAGGGAAAGGGCCTATACTTTTTATTCGTGAAGGCCGAAACAAGGACACCGGGTGGGTTAATGGCCCGTCCGGTTCTCACAAGCTACTACAAAAGTGATCATTTCAAGACCCGACCTTTCGACCCATATAATGTGTACACGAGTCCAAATGAAGCAATTCTCTGCCCCGACTCGTTTCAAAGCATGTACACTCAAATGCTCTGTGGCCTCATAGAGCGCAAGCACGTCCTCCGCCTTGGCGCCGTCTTTGCCTCCGGCCTCCTTCGCGCCATCCGATTCCTCCAACTCCATTGGCCCGAACTCGTCCGTGATATCCGATCTGGAACCCTAAGTTCCCAAATCACGGATCCTGCAATAAGGGAATACATGGAGAAAGTGGTAAAACCCGACCCGGAATTGGCCGAGTTTATGACAGAAGAATGTTCGAAGGAAAATTGGGAAGGAATGATCACAAGAATTTGGCCCAATACAAAATACTTGGACGTGATCGTAACGGGGGCCATGGCCCAATACATTCCAACGCTTAACTACTACAGCGGAGGATTACCCCTTGCGTGCACCATGTACGCTTCCTCGGAGTGCTACTTCGGATTAAACCTTAATCCAATGTGCAAGCCCTCTGAGGTGTCGTACACAATCATGCCAAACATGGCATATTTTGAATTCCTTCTCCACGATCCTAATTCTGGGTCTGTCAGTTCAAAACTGGTGGATTTGGTCGATGTGGAGGTCGGAAAGGAATACGAGTTGGTAATCACCACATATGCGGGACTCTACCGGTATCGTGTCGGGGACATACTCCGAGTGACCGGATTCCACAACTCGGCGCCGCAGTTCCACTTCGTGCGGCGGAAGAACGTGTTGCTGAGCATTGACTCCGACAAAACGGACGAGTCGGAGTTGCAGAATGGGATTGAGAATGCCTCGAAGCTCTTGGCTGATTTCAACACGAGTGTGGTGGAATACACGAGTTATGCAGACACGAGAACGATTCCTGGGCACTATGTTATTTACTGGGAGTTGTTGAGCAAGGAGTCGGCGAACGCACCGAGTGAGGAGGTGTTGAATCGGTGTTGTTTGGAGATGGAGGAGTCGTTGAACTCGGTGTACAGGCAGTGTCGTGTTGCGGATCATTCGATTGGGCCATTGGAAATACGAGTTGTGAAAAATGGAACCTTTGAGGAGCTTATGGATTATGCAATCTCAAGAGGTGCTTCAATAAATCAATATAAGGTACCAAGGTGCGTGAATTTCACACCCATAATGGAGTTATTGGATTCTAGGGTTGTGTCTGTGCATTTTAGCCAAGAATTCCCACATTGGACCCCTGAAAGGAGCTAG 1782 0.4955 MAVDSPISCPLGPPACDKDAKALQFIEEMTRNADAVQERVLAEILTRNANTEYLKRFELGGASDRQTFKSKVPVISYEDVKSEIQRIANGDCSPILSAHPISEFLTSSGTSAGERKLMPTIKEELDRRQLLYSLLMPVMNLYVPGLDKGKGLYFLFVKAETRTPGGLMARPVLTSYYKSDHFKTRPFDPYNVYTSPNEAILCPDSFQSMYTQMLCGLIERKHVLRLGAVFASGLLRAIRFLQLHWPELVRDIRSGTLSSQITDPAIREYMEKVVKPDPELAEFMTEECSKENWEGMITRIWPNTKYLDVIVTGAMAQYIPTLNYYSGGLPLACTMYASSECYFGLNLNPMCKPSEVSYTIMPNMAYFEFLLHDPNSGSVSSKLVDLVDVEVGKEYELVITTYAGLYRYRVGDILRVTGFHNSAPQFHFVRRKNVLLSIDSDKTDESELQNGIENASKLLADFNTSVVEYTSYADTRTIPGHYVIYWELLSKESANAPSEEVLNRCCLEMEESLNSVYRQCRVADHSIGPLEIRVVKNGTFEELMDYAISRGASINQYKVPRCVNFTPIMELLDSRVVSVHFSQEFPHWTPERS* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra11g1450 593 Pfam GH3 auxin-responsive promoter 26 565 IPR004993 -
Vra11g1450 593 PANTHER INDOLE-3-ACETIC ACID-AMIDO SYNTHETASE GH3.2-RELATED 5 591 - -
Vra11g1450 593 PANTHER GH3 DOMAIN-CONTAINING PROTEIN 5 591 IPR004993 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra11g1450 Vra-Chr11 17673292 17675692 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra11g1450 17 582 EF-hand Containing Proteins AT1G23160 50.348 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra11g1450 K14487 - gmx:100776488 1089.33
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra11g1450 11 17673292 17675692 Vra7g1689 7 35468964 35479043 PCT